934 Open source projects that are alternatives of or similar to Ariba

Assembling the cause of phenotypes and genotypes from NGS data

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

A tool to circularize genome assemblies

Rapid large-scale prokaryote pan genome analysis

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Multilocus sequence typing by blast using the schemes from PubMLST

A collection of publications on comparison of high-throughput sequencing technologies.

Genomics Extension for SQLite

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Predict plasmids from uncorrected long read data

A collection of scripts and notes related to genomics and bioinformatics

Data intensive science for everyone.

Finds SNP sites from a multi-FASTA alignment file

An interactive web tool for quality control of DNA sequencing data

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Improve the quality of a denovo assembly by scaffolding and gap filling

Intuitive local web frontend for the BLAST bioinformatics tool

A package for designing compact and comprehensive capture probe sets.

Analysis pipelines for sequencing data

Bayesian genotyper for structural variants

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Bioinformatics library for .NET

Fast alignment and preprocessing of chromatin profiles

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A curated list of awesome bioinformatics software.

Earl Grey: A fully automated TE curation and annotation pipeline

A fast 23andMe genome text file parser, now superseded by arv

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Provide R access to the NCI Genomic Data Commons portal.

GCP Essentials for Bioinformatics Researchers

BACNET is a Java based platform to develop website for multi-omics analysis

A fast whole-genome aligner based on de Bruijn graphs

Example client programs for Saphetor's VarSome annotation API

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

annotate a VCF with other VCFs/BEDs/tabixed files

A high-performance, Pythonic language for bioinformatics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

An open source platform for managing and analyzing biomedical big data

Flexible genotype query among 30,000+ samples whole-genome

An open-access bioinformatics text

De novo assembly based variant calling pipeline for Illumina short reads

A React web application to query and share any PostgreSQL database.

A comprehensive tutorial about GWAS and PRS

Efficient pythonic random access to fasta subsequences

Python library to facilitate genome assembly, annotation, and comparative genomics

A modern genome browser built with JavaScript and HTML5.

Structural variant toolkit for VCFs

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

A fast and sensitive gapped read aligner

The next version of bwa-mem

Tools to process and analyze deep sequencing data.

Python and C++ code for reading and writing genomics data.

Scalable genomic data analysis.

Ultra-fast and memory-efficient (meta-)genome assembler