934 Open source projects that are alternatives of or similar to Ariba

Data and analysis for the Splatter paper

MMseqs2 app to run on your workstation or servers

50% faster, 50% less RAM Machine Learning. Numba rewritten Sklearn. SVD, NNMF, PCA, LinearReg, RidgeReg, Randomized, Truncated SVD/PCA, CSR Matrices all 50+% faster

Phylogenetic trees in Julia

A Python package for fast operations on 1-dimensional genomic signal tracks

Minimal Tensorflow implementation of the paper "Neural Architecture Search With Reinforcement Learning" presented at ICLR 2017

Workflow Description Language - Specification and Implementations

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

Repository of publicly available talks by Leon Eyrich Jessen, PhD. Talks cover Data Science and R in the context of research

d3 library to build circular graphs

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Script to automatically create and run IGV snapshot batchscripts

Discovering known and novel miRNAs from small RNA sequencing data

Lyrics-to-audio-alignement system. Based on Machine Learning Algorithms: Hidden Markov Models with Viterbi forced alignment. The alignment is explicitly aware of durations of musical notes. The phonetic model are classified with MLP Deep Neural Network.

论文写作与资料分享

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

PyGame Learning Environment (PLE) -- Reinforcement Learning Environment in Python.

Reference implementation of "Faster Training of Mask R-CNN by Focusing on Instance Boundaries"

Emperor a tool for the analysis and visualization of large microbial ecology datasets

No description or website provided.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Maintained collection of OSINT related resources. (All Free & Actionable)

Yet Another Chimeric Read Detector

📊 Identify cell types and pathways affected by genetic risk loci.

Repository for few-shot learning machine learning projects

Post-analysis of immune repertoire sequencing data

Code for paper “How2Sketch: generating easy-to-follow tutorials for sketching 3D objects.” I3D (2017)

Real-time multi-physics simulation with an emphasis on medical simulation.

tools for working with genome variation graphs

Implementation of delimited control for C/C++

High Fidelity Simulator for Reinforcement Learning and Robotics Research.

Bioinformatics containers

compacted de Bruijn graph construction in low memory

Create regional association plots from GWAS or meta-analysis

A cross-platform command-line tool for executing jobs in parallel

Examples using Clustergrammer2 to explore high-dimensional datasets.

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

VirNet: A deep attention model for viral reads identification

A plotly.js React component from Plotly 📈

🚦 Run Picard on BAM files and collate 90 metrics into one file.

📓 Open Standard for Particle-Mesh Data

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

PYBOSSA is the ultimate crowdsourcing framework (aka microtasking) to analyze or enrich data that can't be processed by machines alone.

Experiments with satellite image data

A curated list of papers, theses, datasets, and tools related to the application of Machine Learning for Software Engineering

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A collection of LaTeX templates used for research, courses, and miscellanea.

Mapping-Assisted Targeted-Assembly for Metagenomics

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

The START App: R Shiny Transcriptome Analysis Resource Tool

Exact Tandem Repeat Finder (not a TRF replacement)

Python library to handle Gene Ontology (GO) terms

C++ library and cmdline tools for parsing and manipulating VCF files

Conda recipes for the bioconda channel.

Characterization of Germline variants

GeneValidator: Identify problems with predicted genes

Tools for working with SAM/BAM data

A PyTorch implementation of "Graph Wavelet Neural Network" (ICLR 2019)

ShuffleNet Implementation using Keras Functional Framework 2.0