468 Open source projects that are alternatives of or similar to Bgdata

An R package for creating Q-Q and manhattan plots from GWAS results

A fast and sensitive gapped read aligner

Fast genome-wide functional annotation through orthology assignment

GDINA

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

The next version of bwa-mem

Detection of NCLDV signatures in 'omic data

Scripts to download genomes from the NCBI FTP servers

Efficient pythonic random access to fasta subsequences

BACNET is a Java based platform to develop website for multi-omics analysis

A fast 23andMe genome text file parser, now superseded by arv

🐢 bayesAB: Fast Bayesian Methods for A/B Testing

Python library to handle Gene Ontology (GO) terms

annotate a VCF with other VCFs/BEDs/tabixed files

Seamless R and C++ Integration

PHANOTATE: a tool to annotate phage genomes.

Python library to facilitate genome assembly, annotation, and comparative genomics

Calculating Marginal Effects and Levels with Errors Using the Delta Method

tools for working with genome variation graphs

R package to create compact hash digests of R objects

Ultra-fast and memory-efficient (meta-)genome assembler

Rcpp integration for GNU GSL vectors and matrices

A Swiss-Army Knife for Data I/O

table farming

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Predict plasmids from uncorrected long read data

Interactive Heat Maps for R Using plotly

R package of data and code behind the stories and interactives at FiveThirtyEight

A high-performance, Pythonic language for bioinformatics

R wrapper for highcharts

A React web application to query and share any PostgreSQL database.

C++ library and cmdline tools for parsing and manipulating VCF files

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

Reimplementations of Functions Introduced Since R-3.0.0

👮 officer: office documents from R

Example client programs for Saphetor's VarSome annotation API

an R package which converts markdown files (.md, .Rmd) into mindmaps (brainstorms)

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

A modern genome browser built with JavaScript and HTML5.

De novo genome assembly and multisample variant calling

Data intensive science for everyone.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Automate Data Exploration and Treatment

De novo assembly based variant calling pipeline for Illumina short reads

HTML output formats for RMarkdown documents

Import Climate Indices into R

Java utilities for Bioinformatics

Earl Grey: A fully automated TE curation and annotation pipeline

Scalable genomic data analysis.

CRAN Task View: Empirical Finance

A comprehensive tutorial about GWAS and PRS

demography package for R

Tools to process and analyze deep sequencing data.

Miscellaneous R functions

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

forecast package for R

Google Spreadsheets R API

Python and C++ code for reading and writing genomics data.

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.