Citizen Science🔬 A repository of resources related to citizen, community-based and/or non-institutional science
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SciCompforChemistsScientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
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Stdlib✨ Standard library for JavaScript and Node.js. ✨
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JuliaThe Julia Programming Language
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Photorama"PHOTORAMA" template for Jekyll
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AstronnDeep Learning for Astronomers with Tensorflow
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FreudPowerful, efficient particle trajectory analysis in scientific Python.
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Python QuickuiScientific One-Liner Interactive GUI Library
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JanewayA journal management system designed for publishing scholarly articles.
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GstoolsGSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more
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HyphyHyPhy: Hypothesis testing using Phylogenies
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ObservationsTools for loading standard data sets in machine learning
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PhdA list of resources on how/why to do a PhD
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Tidyversity🎓 Tidy tools for academics
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Py6sA Python interface to the 6S Radiative Transfer Model
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NeurodockerGenerate custom Docker and Singularity images, and minimize existing containers
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Nd4jFast, Scientific and Numerical Computing for the JVM (NDArrays)
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TardisTARDIS - Temperature And Radiative Diffusion In Supernovae
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Symengine.pyPython wrappers for SymEngine
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SageMirror of the Sage source tree -- please do not submit PRs here -- everything must be submitted via https://trac.sagemath.org/
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Awesome BiologyCurated (meta)list of resources for Biology.
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Lab.jsOnline research made easy
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OpenmotorAn open-source internal ballistics simulator for rocket motor experimenters
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Sci[MIRROR] Gentoo Science Overlay
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Sfcrc is rust in c++
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PyzoPython to the people
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Fluent Plugin SystemdThis is a fluentd input plugin. It reads logs from the systemd journal.
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ReadingA list of computer-science readings I recommend
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Openflexure microscopeThis repository has now moved to GitLab.com/openflexure/openflexure-microscope
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GenomicsA collection of scripts and notes related to genomics and bioinformatics
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PythonvscodeThis extension is now maintained in the Microsoft fork.
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Scihub2pdfDownloads pdfs via a DOI number, article title or a bibtex file, using the database of libgen(sci-hub) , arxiv
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Awesome BiomechanicsA curated, public list collecting resources for biomechanics and human motion: datasets, processing tools, software for simulation, educational videos, lectures, etc.
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NglessNGLess: NGS with less work
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Sublimenotebook📝 Make Sublime Text your favorite note taking/journal application
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UgeneUGENE is free open-source cross-platform bioinformatics software
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SciblogA blog made with django designed like a scientific paper written in Latex.
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Jortsortthe official website for jortSorting
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SingularitySingularity: Application containers for Linux
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GromacswrapperGromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools (v4.6.x, v5.x, 2016.x, 2018.x, 2019.x, all with the same Python code) into python scripts.
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DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Ember Osf WebEmber front-end for the Open Science Framework
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MeteoinfoMeteoInfo: GIS and scientific computation environment for meteorological community.
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Vscode JournalLightweight journal and simple notes support for Visual Studio Code
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Covid19 scenariosModels of COVID-19 outbreak trajectories and hospital demand
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Code Is ScienceScientific code needs to be open source and peer reviewed
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PintOperate and manipulate physical quantities in Python
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RucioRucio - Scientific Data Management
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OpentronsSoftware for writing protocols and running them on the Opentrons OT-2
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Allensdkcode for reading and processing Allen Institute for Brain Science data
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