598 Open source projects that are alternatives of or similar to Bioperl Live

📱 Shell scripts for Android and iOS device management

SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit.

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

RAxML Next Generation: faster, easier-to-use and more flexible

The sources of the openSNP website

Examples of using deep learning in Bioinformatics

Bioconductor cheat sheet

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

BioGrakn Knowledge Graph

React component for Cytoscape.js network visualisations

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

APBS - software for biomolecular electrostatics and solvation

Density-functional toolkit

A genome browser that shows long reads and complex variants better

A curated list of bioinformatics bench-marking papers and resources.

A curated list of resources for learning bioinformatics.

Extremely flexible golang deep comparison, extends the go testing package, tests HTTP APIs and provides tests suite

Deep learning infrastructure for bioinformatics

Simple and powerful toolkit for BoltDB

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

An powerful enhanced toolkit of MyBatis for simplify development

Toolset for SV simulation, comparison and filtering

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Ten Quick Tips for Deep Learning in Biology

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

cython + htslib == fast VCF and BCF processing

nim wrapper for htslib for parsing genomics data files

Genome assembly evaluation tool

Build your own chat UI with React components in few minutes. Chat UI Kit from chatscope is an open source UI toolkit for developing web chat applications.

Proof-of-concept seq-to-graph mapper and graph generator

Simple simulation of single-cell RNA sequencing data

Cuneiform distributed programming language

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

The Official Mixed Reality Framework for Unity

Toolkit for ArcGIS Runtime SDK for .NET

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

code for reading and processing Allen Institute for Brain Science data

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Annotated data.

A framework for pentesters that facilitates evil twin attacks as well as exploiting other wifi vulnerabilities

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

A tool to circularize genome assemblies

A repository for setting up a RNAseq workflow

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Modern Phishing Tool With Advanced Functionality And Multiple Tunnelling Services [ Android-Support-Available ]

dna2vec: Consistent vector representations of variable-length k-mers

Functional programming toolkit for building server applications in Scala.

NGLess: NGS with less work

Phonia Toolkit is one of the most advanced toolkits to scan phone numbers using only free resources. The goal is to first gather standard information such as country, area, carrier and line type on any international phone numbers with a very good accuracy.

facebook hacking toolkit

Toolkit for Playing with Wi-Fi Probe Requests

Tools for working with genomic and high throughput sequencing data.

Qtools is a collection of utilities to aid development with CommonQt

Pokémon (3DS) ROM Editor & Randomizer

Strelka2 germline and somatic small variant caller

Mercury is a hacking tool used to collect information and use the information to further hurt the target