177 Open source projects that are alternatives of or similar to brainlit

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Graph theory analysis of brain MRI data

The MATLAB toolbox for MEG, EEG and iEEG analysis

Brain Imaging Analysis Kit

MATLAB/Octave GIfTI Library

Multi-modal Image Registration And Connectivity anaLysis

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Core methods and structures for neuroscience research in Julia.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

NeuroInformatics Database

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

medical image visualization library and development toolkit

Software platform for clinical neuroimaging studies

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

🕝 Time-warped principal components analysis (twPCA)

A block modeling system for cognitive neuroscience

A toolbox for integrated information theory.

A publicly-editable collection of open computational neuroscience resources

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

A Python-based module for creating flexible and robust spike sorting pipelines.

A list of schools and researchers in computational neuroscience

CS198-96: Intro to Neurotechnology @ UC Berkeley

认知计算神经联盟 讨论会

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

Code related to Neuroimaging Analysis Replication and Prediction Study

The NeuroMorph analysis and visualization toolkit

A framework for developing neural network models for 3D image processing.

Brain Modeling Toolkit

The Arbor multi-compartment neural network simulation library.

Brain Dynamics Programming in Python

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

A brian2 extension to simulate spiking neural networks on GPUs

Graphical experiment builder for the social sciences

Visualizer for large-scale and interactive ray-tracing of neurons

Mother of All BCI Benchmarks

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Generate custom Docker and Singularity images, and minimize existing containers

Database for experimental neuroscience laboratories

a python based software for visualization of neuroanatomical and morphological data.

code for storing neurodata images and image annotations

Distributed, Versioned, Image-oriented Dataservice

Python-based module with spike sorter wrappers and a simple API for running them.

A multi-purpose GPU-accelerated open-source suite for brain data visualization

C++ library for simulation of multiscale neural field dynamics

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

An Awesome List of Cognitive Science Resources

Python machine learning package based on sklearn API for multivariate data processing and statistical analysis of symmetric positive definite matrices via Riemannian geometry

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

Parameterizing neural power spectra into periodic & aperiodic components.

A Parametric Framework to Generate Visual Illusions using Python

cell detection in calcium imaging recordings

Fast spike sorting with drift correction for up to a thousand channels

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Blue Brain Python Optimisation Library

EntroPy: complexity of time-series in Python (DEPRECATED)