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All Projects → raamana → mrivis

raamana / mrivis

Licence: MIT license
medical image visualization library and development toolkit

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python
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matlab
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Makefile
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Labels

visualizationmismatchquality-controlneurosciencesimilaritycomparisonmriregistrationalignmentneuroimagingcheckerboard

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mrivis

https://api.codacy.com/project/badge/Grade/370b1b78383b40b99eb15ae0490cfbdb

mrivis offers:

  • advanced classes to easily develop customizable visualizations of 3D and 4D images, such as Carpet(), SlicePicker(), Collage() and the like
  • tools for comparison of spatial alignment of two 3D MRI scans (T1, T2, PET etc) using checkerboard plots and other comparison methods
  • additional helper, convenience and utility scripts related to visualization

Full documentation for both visualization classes and alignment check tools is available at https://raamana.github.io/mrivis/readme.html

A sample gallery of different ways to check alignment is shown below:

docs/flyer_option_matrix.png

Full documentation https://raamana.github.io/mrivis/readme.html

Executable and interactive demo for the visualization classes:

Installation

$ pip install mrivis

If you would like to use the export to GIF from SlicePicker, then install the imageio package as well via pip install imageio

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