546 Open source projects that are alternatives of or similar to Cdk

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

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Universal cheminformatics libraries, utilities and database search tools

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

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chemical graph theory library for JavaScript

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Graph-based molecule modeling toolkit for cheminformatics

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A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

A curated list of resources for machine learning for small-molecule drug discovery

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Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

Example client programs for Saphetor's VarSome annotation API

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

The Microbiome Interpretable Temporal Rule Engine

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Highly adaptable common interface for proteomics search and de novo engines

DOM Text Based Multiple Sequence Alignment Library

A simplified pipeline for ctDNA sequencing data analysis

Real-time species-typing visualisation for nanopore data.

MMseqs2 app to run on your workstation or servers

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The Ontology for Biomedical Investigations

Python package providing some useful tools when dealing with molecules and materials under periodic boundary conditions and uniform grids. This is a mirror of https://gitlab.com/ales.genova/pbcpy

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

micca - MICrobial Community Analysis

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Aim to be the bioinformatics repository with more and newer packages

De novo assembly based variant calling pipeline for Illumina short reads

Olympus: a benchmarking framework for noisy optimization and experiment planning

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annotate a VCF with other VCFs/BEDs/tabixed files