325 Open source projects that are alternatives of or similar to cerebra

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

Reference mapping for single-cell genomics

Papers with code for single cell related papers

Reconstruction of complex single-cell trajectories using CellRouter

Conversion between scRNA-seq objects

Harmony framework for connecting scRNA-seq data from discrete time points

Single-cell Hierarchical Poisson Factorization

cTPnet Package

A tool for semi-automatic cell type annotation

BEER: Batch EffEct Remover for single-cell data

SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection

Efficient and precise single-cell reference atlas mapping with Symphony

Demultiplexing pooled scRNA-seq data with or without genotype reference

Spatial alignment of single cell transcriptomic data.

Single cell type annotation guided by cell atlases, with freedom to be queer

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

Sentieon DNAseq

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

💾 📃 "Reads to report" for public health and clinical microbiology

Fast and accurate gene fusion detection from RNA-Seq data

PEPPER-Margin-DeepVariant

Population-wide Deletion Calling

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files