1051 Open source projects that are alternatives of or similar to Cgranges

Efficient pythonic random access to fasta subsequences

an implementation of NSGA-II in java

Bioinformatics library for .NET

Example client programs for Saphetor's VarSome annotation API

A collection of scripts and notes related to genomics and bioinformatics

A tool to circularize genome assemblies

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Bayesian haplotype-based mutation calling

A curated list of bioinformatics bench-marking papers and resources.

A high-performance, Pythonic language for bioinformatics

A genome browser that shows long reads and complex variants better

Deep learning infrastructure for bioinformatics

A powerful open source data warehouse system

Ten Quick Tips for Deep Learning in Biology

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

🔬 BEDOPS: high-performance genomic feature operations

Official git repository for Biopython (originally converted from CVS)

Reads simulator

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

A faster lmm for GWAS. Supports GPU backend.

dysgu-SV is a collection of tools for calling structural variants using short or long reads

A simple command-line tool to download data from Joint Genome Institute databases

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Fast hash function for DNA sequences

Compute N50/NG50 and auN/auNG

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Assembling the cause of phenotypes and genotypes from NGS data

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Provide R access to the NCI Genomic Data Commons portal.

Earl Grey: A fully automated TE curation and annotation pipeline

A fast 23andMe genome text file parser, now superseded by arv

Bayesian genotyper for structural variants

An open-access bioinformatics text

annotate a VCF with other VCFs/BEDs/tabixed files

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Python library to facilitate genome assembly, annotation, and comparative genomics

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Model and predict short DNA sequence features with neural networks

Flexible genotype query among 30,000+ samples whole-genome

Visualization of sorting algorithm

N-Dimensional Fast Methods: Fast Marching, Fast Sweeping, Group Marching, Fast Iterative, etc.

FastQC port to Qt5: A quality control tool for high throughput sequence data.

The Art of Template MetaProgramming (TMP) in Modern C++♦️

牛客网企业编程真题代码

ACM-ICPC Preparation Guide

The most comprehensive collection of accurate astronomical algorithms in (C++, Objective-C and) Swift.

Race and ethnicity Imputation from Disease history with Deep LEarning

Python Script to process input data from rtl_fm and multimon-NG - multiple Plugin support

Java solutions and explanations to problems in the book Cracking the Coding Interview(6th Edition).

🤖 Places where you can learn robotics (and stuff like that) online 🤖

Java library for approximate nearest neighbors search using Hierarchical Navigable Small World graphs

A collection of some implementations of data structures and algorithms.

Connected components on multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

Pytorch Implementation of Reinforcement Learning Algorithms ( Soft Actor Critic(SAC)/ DDPG / TD3 /DQN / A2C/ PPO / TRPO)

A robust and fast clustering method for amplicon-based studies

LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解，记录自己的leetcode解题之路。)