40 Open source projects that are alternatives of or similar to ci4cc-informatics-resources

🧠 Algorithms and Data structures

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

R package for fitting joint models to time-to-event data and multivariate longitudinal data

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Aplicativo para o projeto "Anjos do SuperAção"

Solutions of some problems in competitive programming

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Multi-task deep learning framework for multi-omics data analysis

Provide R access to the NCI Genomic Data Commons portal.

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

An interactive web portal for exploring immuno-oncology data

3D hotspot mutation proximity analysis tool

Text mining cancer biomarkers for the CIVIC database

A Python-Tensorflow neural network for classifying cancer data

Cancer-dedicated gene set interpretation

List of IARC bioinformatics nextflow pipelines

A basic framework for pulmonary nodule detection and characterization in CT

Cancer Predisposition Sequencing Reporter (CPSR)

Gene fusion detection and visualization

TCGA data acquisition and processing for Project Cognoma

CNN histopathologic tumor identifier.

Backend Server for CIViC Project

Fast and accurate gene fusion detection from RNA-Seq data

A Slicer extension to provide a GUI around pyradiomics

A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…

An open source openEHR server

Flutter library to create beautiful surveys (aligned with ResearchKit on iOS)

I'm collecting information regarding CDISC

Crowd-source tool to annotate, rank and generally enhance the clarity and accuracy of clinical trial information.

Aggregate and analyse information on clinical trials from public registers

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

Documentation for Solor Knowledge Architecture and Knowledge Management Environment

Deep Learning for Natural Language Processing Reading Group | University of British Columbia (UBC)

Programming Solutions for OJs and Algorithms

A JavaScript module for searching music scores.