325 Open source projects that are alternatives of or similar to CompBioDatasetsForMachineLearning

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

The Biochemical Algorithms Library

Here we collect and discuss the best DeFI & Blockchain researches and tools. Feel free to DM me on Twitter or open pool request.

Streamlining SLAM-seq analysis with ultra-high sensitivity

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

⚽️ Extract, prepare and publish Transfermarkt datasets.

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

NPM package for copying and converting Cloud Firestore data to BigQuery.

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

Syntax highlighting for computational biology

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

CPM implementation in pure JavaScript

Collection of NLP model explanations and accompanying analysis tools

A Go package for engineering organisms.

Clothing detection dataset

pyQms, generalized, fast and accurate mass spectrometry data quantification

A collection of resources on dynamic/streaming/temporal/evolving graph processing systems, databases, data structures, datasets, and related academic and industrial work

Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

Python package for data.world

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Useful links of different content related to AI, Computer Vision, and Robotics.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A research data management plugin for the Git version control system.

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

Datasets list for various computer vision tasks

The Microbiome Interpretable Temporal Rule Engine

A curated list of awesome computational cryo-EM methods.

No description or website provided.

A library to build and execute typed scientific workflows

🚓 Crime dataset for the City of Buenos Aires, Argentina

Fitness landscape exploration sandbox for biological sequence design.

🚀 A curated and opinionated list of resources (English & Russian) for Backend developers | Структурированный список ресурсов для изучения Backend разработки

Clustering scRNAseq by genotypes

Data package for accessing GeoDa datasets using R

Predicting protein structure through sequence modeling

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

DeepChem 2017: Deep Learning & NLP for Computational Chemistry, Biology & Nano-materials

A curated list of datasets, publically available for machine learning research in the area of manufacturing

Robust and scalable inference of cell lineages from gene expression data.

【非公式】AtCoderがもっと楽しくなるリンク集です。有志による非公式サービス・ツール・ライブラリ・記事などをまとめています。

screenlamp is a Python toolkit for hypothesis-driven virtual screening

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Myokit: A simple interface to cardiac cellular electrophysiology

Routines and data structures for using isarn-sketches idiomatically in Apache Spark

An R Package for Geneset Enrichment Workflows

🧱 A template to create a CuratedStack without (or with) code

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Papers, Datasets, Algorithms, SOTA for STR. Long-time Maintaining

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

📺 A curated list of worldwide legal anime streaming.

Contact map analysis for biomolecules; based on MDTraj

R library for data.world

Ultrafast sequence typing and gene detection from NGS raw reads

A collaborative and evolving list of hackathons in Italy

Launched in March 2020 in response to the coronavirus disease 2019 (COVID-19) pandemic, COVID-Net is a global open source, open access initiative dedicated to accelerating advancement in machine learning to aid front-line healthcare workers and clinical institutions around the world fighting the continuing pandemic. Towards this goal, our global…

Collection of scripts for bacterial genomics

A curated list of Coding Style Conventions and Standards.

🔥 💯 📖 Curated list of documentation, plugins, links and more for software developers 📖

A python package for scraping oddsportal.com

🧬 An R package for visualizing molecular data in 3D