CellOCellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
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Mutual labels: bioinformatics, rna-seq, computational-biology
pyrpipeReproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
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Mutual labels: bioinformatics, rna-seq
gene-oracleFeature extraction algorithm for genomic data
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Mutual labels: bioinformatics, rna-seq
MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
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Mutual labels: bioinformatics, rna-seq
CoNekTCoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
Stars: ✭ 17 (-29.17%)
Mutual labels: bioinformatics, rna-seq
bistroA library to build and execute typed scientific workflows
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Mutual labels: bioinformatics, computational-biology
picardmetrics🚦 Run Picard on BAM files and collate 90 metrics into one file.
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Mutual labels: bioinformatics, rna-seq
mitreThe Microbiome Interpretable Temporal Rule Engine
Stars: ✭ 37 (+54.17%)
Mutual labels: bioinformatics, computational-biology
MultiqcAggregate results from bioinformatics analyses across many samples into a single report.
Stars: ✭ 708 (+2850%)
Mutual labels: bioinformatics, pypi
VestaboardAn API Wrapper for Vestaboards written in Python
Stars: ✭ 23 (-4.17%)
Mutual labels: pypi
siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Stars: ✭ 32 (+33.33%)
Mutual labels: bioinformatics
sample-sheetA permissively licensed library designed to replace Illumina's Experiment Manager
Stars: ✭ 42 (+75%)
Mutual labels: bioinformatics
protwisProtwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
Stars: ✭ 20 (-16.67%)
Mutual labels: bioinformatics
rkmhClassify sequencing reads using MinHash.
Stars: ✭ 42 (+75%)
Mutual labels: bioinformatics
BridgeDbThe BridgeDb Library source code
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Mutual labels: bioinformatics
ProxyGrabAsynchronous Library made using Python and aiohttp to get proxies from multiple services!
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Mutual labels: pypi
gnparserGNparser normalises scientific names and extracts their semantic elements.
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Mutual labels: bioinformatics
TeamTeriGenomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (+25%)
Mutual labels: bioinformatics
Binning refinerImproving genome bins through the combination of different binning programs
Stars: ✭ 26 (+8.33%)
Mutual labels: bioinformatics
codon-usage-tables📊 Codon usage tables in code-friendly format + Python bindings
Stars: ✭ 21 (-12.5%)
Mutual labels: bioinformatics
