99 Open source projects that are alternatives of or similar to covid-19-signal

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A collection of publications on comparison of high-throughput sequencing technologies.

A python-based isomiR quantification and analysis pipeline

highly-efficient & lightweight mutation signature matrix aggregation

Data intensive science for everyone.

Simple & Efficient data access for Scala and Scala.js

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Fast and accurate sequence demultiplexing

RNASeq pipeline

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Double Sided Assembly Line Balancing with Genetic Algorithm (C#)

Assembling the cause of phenotypes and genotypes from NGS data

parallelized blat with multi-threads support

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

AStarix: Fast and Optimal Sequence-to-Graph Aligner

Tools for analyzing 10X Genomics data

Sequence lineage information extracted from RKI sequence data repo

An interactive radial tree for functional hierarchies and omics data visualization

Metagenomics calibration R package

micca - MICrobial Community Analysis

No description or website provided.

VirNet: A deep attention model for viral reads identification

R package for microbiome biomarker discovery

GraphBin: Refined binning of metagenomic contigs using assembly graphs

Mapping-Assisted Targeted-Assembly for Metagenomics

Compare different differential abundance and expression methods

Improving genome bins through the combination of different binning programs

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

AMBER: Assessment of Metagenome BinnERs

The MG-RAST Backend -- the API server

Predict AMPs in (meta)genomes and peptides

Computational synthetic biology: Predicting DNA edits for bioengineering

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration