93 Open source projects that are alternatives of or similar to cutevariant

Fast API server for calculating linkage disequilibrium

🔧 Simple script in python to convert CSV files to VCF

No description or website provided.

An automatic Python Qt binding transpiler to the Qt.py abstraction layer.

Haplotype VCF comparison tools

KOAPY 는 키움 OpenAPI 를 Python 에서 쉽게 사용할 수 있도록 만든 라이브러리 패키지 및 툴입니다.

Rare variant test software for next generation sequencing data

Cancer Predisposition Sequencing Reporter (CPSR)

A DNA Sequence Alignment/Map (SAM) library for Clojure

calcardbackup: moved to https://codeberg.org/BernieO/calcardbackup

Launched in 2018. It's 2022 and PySimpleGUI is actively developed & supported. Create complex windows simply. Supports tkinter, Qt, WxPython, Remi (in browser). Create GUI applications trivially with a full set of widgets. Multi-Window applications are also simple. 3.4 to 3.11 supported. 325+ Demo programs & Cookbook for rapid start. Extensive d…

A Java API for high-throughput sequencing data (HTS) formats.

Powerful statistics for VCF files

bLUe - A simple and comprehensive image editor featuring automatic contrast enhancement, color correction, 3D LUT creation, raw postprocessing, exposure fusion and noise reduction

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

A fluent builder class for vCard files.

A PySide2 based file and asset manager for animation and CG productions.

vembrane filters VCF records using python expressions

A Live working Example Application of Python, Qt, PySide2, MongoDB, PyMongo, QTreeView, QAbstractTableModel

Syntax highlighting for computational biology

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

find large indels (in the blind spot between GATK/freebayes and SV callers)

cython + htslib == fast VCF and BCF processing

View your VALORANT performance in different areas of every map in the game!

Manhattan plot Generator

Toolset for SV simulation, comparison and filtering

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

📊Evaluating, filtering, comparing, and visualising VCF

Pyro models of SARS-CoV-2 variants

simple viewer for variant call format using htslib

Live coding environment for Python, Qt and QML.

More useful widgets for PyQt5

Code to compute the XP-CLR statistic to infer natural selection

Genome-wide imputation pipeline

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

CellRank for directed single-cell fate mapping

Hybrid web/desktop applications on Linux

A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.

自动裁剪PDF图表中的白边 / Cut white bound in PDF figures automatically.

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

Genomic VCF to tab-separated values

youtube-dl GUI simplify

Spark VCF data source implementation for Dataframes

Table analysis and plotting application written in PySide2/PyQt5

Resource of human chromosome schematics & images

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

A curated list of awesome bioinformatics software.

Binomica Public Repository for Biological Parts

✂️ ⚡️ Rapid haploid variant calling and core genome alignment

Forward-time simulation in Python using fwdpp

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

A tool to plot significant regions of GWAS

Genetics (Initialization, Selection, Crossover, Mutation)

Osmapy - Python Editor for OpenStreetMap

Frequently used commands in bioinformatics

My small SLAM simulator to study "SLAM for dummies"

tools for reading, writing, merging, and remapping SNPs

Learning the Variant Call Format