Top 20 genetics open source projects

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

✭ 24

r C++c genetics bayesian hierarchical-clustering

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

✭ 96

r HTML snps genetics imputation polygenic-risk-scores personal-genomics

awesome-genetics

A curated list of awesome bioinformatics software.

✭ 60

bioinformatics genomics genetics health dna ancestry snpedia 23andme geneology consumer-dna-test

cutevariant

A standalone and free application to explore genetics variations from VCF file

✭ 61

python gui genetics vcf pyside2 variant-call-format

xpclr

Code to compute the XP-CLR statistic to infer natural selection

✭ 64

python shell bioinformatics genetics popgen selection

Repo-Bio

Binomica Public Repository for Biological Parts

✭ 21

genetics biology dna parts dna-sequences biotechnology

pyro-cov

Pyro models of SARS-CoV-2 variants

✭ 39

Jupyter Notebook python TeX r Makefile C++genetics epidemiology sars-cov-2

HumanIdiogramLibrary

Resource of human chromosome schematics & images

✭ 76

genomics genetics resources data-visualization genomics-visualization

region-plot

A tool to plot significant regions of GWAS

✭ 20

python bioinformatics genomics genetics plot

dee2

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

✭ 32

shell HTML r Dockerfile data-mining bioinformatics rna-seq genomics genetics transcriptomics rna-expression

graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

✭ 16

r TeX ruby package benchmarking genomics graph-algorithms genetics gene-expression simulated-data joss simulation-modeling genomic-data-analysis ngs-analysis r-stats gene-regulatory-networks igraph-networks

GeneLab Data Processing

No description or website provided.

✭ 32

Jupyter Notebook r shell python pipeline genetics genes genelab

fwdpy11

Forward-time simulation in Python using fwdpp

✭ 25

python C++CMake rust Dockerfile shell genomics genetics simulation population-genetics tree-sequences

Genetics

Genetics (Initialization, Selection, Crossover, Mutation)

✭ 15

Jupyter Notebook genetics mutation mutations selection population heuristics crossover chromosome computational-intelligence pseudo-random

manhattan generator

Manhattan plot Generator

✭ 20

python bioinformatics genomics genetics plot

LDServer

Fast API server for calculating linkage disequilibrium

✭ 13

C++python CMake HTML genetics

genipe

Genome-wide imputation pipeline

✭ 28

python TeX bioinformatics genomics genetics

cellrank

CellRank for directed single-cell fate mapping

✭ 222

python shell data-science machine-learning bioinformatics genetics trajectory-generation markov-chains manifold-learning single-cell-genomics single-cell-rna-seq cell-fate-transitions fuzzy-clustering-analyses rna-velocity cell-fate-determination

rvtests

Rare variant test software for next generation sequencing data

✭ 114

C++fortran Makefile c r shell python gwas kernel genetics ngs next-generation-sequencing variants meta-analysis genotype umich skat association-analysis rare-variant vcf-files

Synopsys-Project-2017

A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.

✭ 14

Jupyter Notebook python Makefile bioinformatics deep-learning genetics keras diabetes synopsys

1-20 of 20 genetics projects