All Projects → disq → Similar Projects or Alternatives

563 Open source projects that are alternatives of or similar to disq

Deeptools
Tools to process and analyze deep sequencing data.
Stars: ✭ 448 (+1444.83%)
Mutual labels:  genomics, ngs
catch
A package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (+89.66%)
Mutual labels:  genomics, ngs
Galaxy
Data intensive science for everyone.
Stars: ✭ 812 (+2700%)
Mutual labels:  genomics, ngs
Ngless
NGLess: NGS with less work
Stars: ✭ 115 (+296.55%)
Mutual labels:  genomics, ngs
MTBseq source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (-10.34%)
Mutual labels:  genomics, ngs
Gatk
Official code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+3355.17%)
Mutual labels:  genomics, ngs
STing
Ultrafast sequence typing and gene detection from NGS raw reads
Stars: ✭ 15 (-48.28%)
Mutual labels:  genomics, ngs
Jvarkit
Java utilities for Bioinformatics
Stars: ✭ 313 (+979.31%)
Mutual labels:  genomics, ngs
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Stars: ✭ 64 (+120.69%)
Mutual labels:  genomics, ngs
bio-dockers
🐳 Bio-dockers: dockerized bioinformatic tools
Stars: ✭ 33 (+13.79%)
Mutual labels:  genomics, ngs
MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Stars: ✭ 22 (-24.14%)
Mutual labels:  genomics, ngs
Deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+8189.66%)
Mutual labels:  genomics, ngs
Htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Stars: ✭ 220 (+658.62%)
Mutual labels:  genomics, ngs
bac-genomics-scripts
Collection of scripts for bacterial genomics
Stars: ✭ 39 (+34.48%)
Mutual labels:  genomics, ngs
bin
My bioinfo toolbox
Stars: ✭ 42 (+44.83%)
Mutual labels:  ngs
nthash
ntHash implementation in Rust
Stars: ✭ 26 (-10.34%)
Mutual labels:  genomics
iis
Information Inference Service of the OpenAIRE system
Stars: ✭ 16 (-44.83%)
Mutual labels:  hadoop
Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Stars: ✭ 45 (+55.17%)
Mutual labels:  ngs
big-data-exploration
[Archive] Intern project - Big Data Exploration using MongoDB - This Repository is NOT a supported MongoDB product
Stars: ✭ 43 (+48.28%)
Mutual labels:  hadoop
omxware-getting-started
Examples to get started with IBM Functional Genomics Platform
Stars: ✭ 13 (-55.17%)
Mutual labels:  genomics
CuteVCF
simple viewer for variant call format using htslib
Stars: ✭ 30 (+3.45%)
Mutual labels:  genomics
cryfa
A secure encryption tool for genomic data
Stars: ✭ 53 (+82.76%)
Mutual labels:  genomics
manhattan generator
Manhattan plot Generator
Stars: ✭ 20 (-31.03%)
Mutual labels:  genomics
mandrake
Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
Stars: ✭ 29 (+0%)
Mutual labels:  genomics
instaGRAAL
Large genome reassembly based on Hi-C data, continuation of GRAAL
Stars: ✭ 32 (+10.34%)
Mutual labels:  genomics
SplitThreader
Explore rearrangements and copy-number amplifications in a cancer genome
Stars: ✭ 65 (+124.14%)
Mutual labels:  genomics
bap
Bead-based single-cell atac processing
Stars: ✭ 20 (-31.03%)
Mutual labels:  genomics
atacr
Analysing Capture Seq Count Data
Stars: ✭ 14 (-51.72%)
Mutual labels:  genomics
genepattern-server
The GenePattern Server web application
Stars: ✭ 26 (-10.34%)
Mutual labels:  genomics
DISCOVER
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
Stars: ✭ 21 (-27.59%)
Mutual labels:  genomics
haslr
A fast tool for hybrid genome assembly of long and short reads
Stars: ✭ 68 (+134.48%)
Mutual labels:  genomics
phenol
phenol: Phenotype ontology library
Stars: ✭ 15 (-48.28%)
Mutual labels:  genomics
OpenOmics
A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.
Stars: ✭ 22 (-24.14%)
Mutual labels:  genomics
datalake-etl-pipeline
Simplified ETL process in Hadoop using Apache Spark. Has complete ETL pipeline for datalake. SparkSession extensions, DataFrame validation, Column extensions, SQL functions, and DataFrame transformations
Stars: ✭ 39 (+34.48%)
Mutual labels:  hadoop
human genomics pipeline
A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Stars: ✭ 19 (-34.48%)
Mutual labels:  genomics
fwdpy11
Forward-time simulation in Python using fwdpp
Stars: ✭ 25 (-13.79%)
Mutual labels:  genomics
vrs-python
GA4GH Variation Representation Python Implementation
Stars: ✭ 35 (+20.69%)
Mutual labels:  genomics
qs-hadoop
大数据生态圈学习
Stars: ✭ 18 (-37.93%)
Mutual labels:  hadoop
hive to es
同步Hive数据仓库数据到Elasticsearch的小工具
Stars: ✭ 21 (-27.59%)
Mutual labels:  hadoop
ngs pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Stars: ✭ 40 (+37.93%)
Mutual labels:  ngs
HDFS-Netdisc
基于Hadoop的分布式云存储系统 🌴
Stars: ✭ 56 (+93.1%)
Mutual labels:  hadoop
dockerfiles
Multi docker container images for main Big Data Tools. (Hadoop, Spark, Kafka, HBase, Cassandra, Zookeeper, Zeppelin, Drill, Flink, Hive, Hue, Mesos, ... )
Stars: ✭ 29 (+0%)
Mutual labels:  hadoop
genoiser
use the noise
Stars: ✭ 15 (-48.28%)
Mutual labels:  genomics
corc
An ORC File Scheme for the Cascading data processing platform.
Stars: ✭ 14 (-51.72%)
Mutual labels:  hadoop
smart-data-lake
Smart Automation Tool for building modern Data Lakes and Data Pipelines
Stars: ✭ 79 (+172.41%)
Mutual labels:  hadoop
CUT-RUNTools-2.0
CUT&RUN and CUT&Tag data processing and analysis
Stars: ✭ 36 (+24.14%)
Mutual labels:  genomics
DriverPower
DriverPower
Stars: ✭ 22 (-24.14%)
Mutual labels:  genomics
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Stars: ✭ 103 (+255.17%)
Mutual labels:  genomics
LogAnalyzeHelper
论坛日志分析系统清洗程序(包含IP规则库,UDF开发,MapReduce程序,日志数据)
Stars: ✭ 33 (+13.79%)
Mutual labels:  hadoop
Data-pipeline-project
Data pipeline project
Stars: ✭ 18 (-37.93%)
Mutual labels:  hadoop
psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Stars: ✭ 121 (+317.24%)
Mutual labels:  genomics
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 159 (+448.28%)
Mutual labels:  genomics
bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Stars: ✭ 36 (+24.14%)
Mutual labels:  genomics
LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Stars: ✭ 26 (-10.34%)
Mutual labels:  genomics
learning-hadoop-and-spark
Companion to Learning Hadoop and Learning Spark courses on Linked In Learning
Stars: ✭ 146 (+403.45%)
Mutual labels:  hadoop
pyspark-ML-in-Colab
Pyspark in Google Colab: A simple machine learning (Linear Regression) model
Stars: ✭ 32 (+10.34%)
Mutual labels:  hadoop
gnomad-browser
Explore gnomAD datasets on the web
Stars: ✭ 61 (+110.34%)
Mutual labels:  genomics
CliqueSNV
No description or website provided.
Stars: ✭ 13 (-55.17%)
Mutual labels:  ngs
mity
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
Stars: ✭ 27 (-6.9%)
Mutual labels:  genomics
bigdata-doc
大数据学习笔记,学习路线,技术案例整理。
Stars: ✭ 37 (+27.59%)
Mutual labels:  hadoop
1-60 of 563 similar projects