456 Open source projects that are alternatives of or similar to dropEst

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

A lightweight data processing framework for Apache Spark

SciKIt-learn Pipeline in PAndas

A python library to manipulate and transform indexable data (lists, arrays, ...)

Today I Learned

metaGraf is a opinionated specification for describing a software component and what its requirements are from the runtime environment. The mg command, turns metaGraf specifications into Kubernetes resources, supporting CI, CD and GitOps software delivery.

TypeScript/JavaScript utilities for those who don't like utilities

Old specification for Hack pipes in JavaScript. Please go to the new specification.

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

Riscv32 CPU Project

Transformers Pipeline with KoELECTRA

An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis

Reference mapping for single-cell genomics

开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程，一切想到的，想不到的，应有尽有

Generate beautiful documentation for your data pipelines in markdown format

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Normalize text string

This a JavaScript Library for the Numerical Javascript and Machine Learning

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

🔬 Очистка датасетов от мусора (нормализация, препроцессинг)

A build system for modular development in Salesforce, delivered as a sfdx plugin that can be implemented in any CI/CD system of choice

FreeCAD - flamingo workbench

Utility package for working with classification targets and label-encodings

Repo containing the Twitter preprocessor module, developed by the AUTH OSWinds team

Manuscript for functional prediction of transcriptomic “dark matter” across species

Discrete Distributional Differential Expression

💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.

A python framework to process FITS images. Built for Astronomy.

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

An image build orchestrator for the modern web

基于Spring Cloud的微服务业务框架

A stream processing framework for high-throughput applications.

A library to build and execute typed scientific workflows

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Pipelines as Code

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

An example project that predicts risk of credit card default using a Logistic Regression classifier and a 30,000 sample dataset.

Reconstruction of complex single-cell trajectories using CellRouter

Making it easier to build stable, trustworthy data-science pipelines.

Simple and flexible ML workflow engine

基于Pipeline实现的JT1078Gateway支持TCP/UDP,目前只支持http-flv、ws-flv、hls三种拉流方式

Swarm CI - Docker Swarm-based CI system or enhancement to existing systems.

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Fun functional programming with pipelinable functions

Stacked Denoising AutoEncoder based on TensorFlow

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Official source code of "Preprocessing Method for Performance Enhancement in CNN-based STEMI Detection from 12-lead ECG"

Precision HLA typing from next-generation sequencing data

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

RNA-seq analysis pipeline for detection gene-fusions

Papers with code for single cell related papers

M-Lab ingestion pipeline

Pytorch Implementation of GoEmotions 😍😢😱

A non-intrusive Python pipeline.

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Makes Interactive Chart Widget, Cleans raw data, Runs baseline models, Interactive hyperparameter tuning & tracking

Spatial Transcriptomics Dashboard