scarchesReference mapping for single-cell genomics
Stars: ✭ 175 (+224.07%)
Mutual labels: scrna-seq, single-cell-genomics, multiomics
ReductionWrappersR wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
Stars: ✭ 31 (-42.59%)
Mutual labels: tsne, umap, dimension-reduction
topometryA comprehensive dimensional reduction framework to recover the latent topology from high-dimensional data.
Stars: ✭ 64 (+18.52%)
Mutual labels: clustering, dimension-reduction, single-cell-genomics
BEERBEER: Batch EffEct Remover for single-cell data
Stars: ✭ 19 (-64.81%)
Mutual labels: scrna-seq, umap, scatac-seq
snATAC<<------ Use SnapATAC!!
Stars: ✭ 23 (-57.41%)
Mutual labels: clustering, single-cell-genomics, single-cell-atac-seq
SHARPSHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection
Stars: ✭ 14 (-74.07%)
Mutual labels: clustering, scrna-seq
Hazelcast Cpp ClientHazelcast IMDG C++ Client
Stars: ✭ 67 (+24.07%)
Mutual labels: big-data, clustering
cellrankCellRank for directed single-cell fate mapping
Stars: ✭ 222 (+311.11%)
Mutual labels: single-cell-genomics, single-cell-rna-seq
souporcellClustering scRNAseq by genotypes
Stars: ✭ 88 (+62.96%)
Mutual labels: genomics, scrna-seq
Hazelcast Go ClientHazelcast IMDG Go Client
Stars: ✭ 140 (+159.26%)
Mutual labels: big-data, clustering
cerebraA tool for fast and accurate summarizing of variant calling format (VCF) files
Stars: ✭ 55 (+1.85%)
Mutual labels: genomics, scrna-seq
MoosefsMooseFS – Open Source, Petabyte, Fault-Tolerant, Highly Performing, Scalable Network Distributed File System (Software-Defined Storage)
Stars: ✭ 1,025 (+1798.15%)
Mutual labels: big-data, clustering
pytorch kmeansImplementation of the k-means algorithm in PyTorch that works for large datasets
Stars: ✭ 38 (-29.63%)
Mutual labels: big-data, clustering
dropClustVersion 2.1.0 released
Stars: ✭ 19 (-64.81%)
Mutual labels: genomics, clustering
scAlignA deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Stars: ✭ 32 (-40.74%)
Mutual labels: scrna-seq, single-cell-genomics
scGEAToolboxscGEAToolbox: Matlab toolbox for single-cell gene expression analyses
Stars: ✭ 15 (-72.22%)
Mutual labels: scrna-seq, tsne
TaijiAll-in-one analysis pipeline
Stars: ✭ 28 (-48.15%)
Mutual labels: single-cell-rna-seq, single-cell-atac-seq
Clustering4EverC4E, a JVM friendly library written in Scala for both local and distributed (Spark) Clustering.
Stars: ✭ 126 (+133.33%)
Mutual labels: big-data, clustering
