481 Open source projects that are alternatives of or similar to Eggnog Mapper

Provide R access to the NCI Genomic Data Commons portal.

Bystro genetic analysis (annotation, filtering, statistics)

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A package for designing compact and comprehensive capture probe sets.

Predict plasmids from uncorrected long read data

Kotlin extension bridge library for Dagger2 (proof-of-concept)

This repo contains annotated research papers that I found really good and useful

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A light-weight android library that can be quickly integrated into any app to use analytics tools.

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

A Jupyter widget for annotating images with bounding boxes

Feel the power of the Manifest V3. The future, right now!

De novo assembly based variant calling pipeline for Illumina short reads

Spring 4 and Hibernate 5 integration example using annotations.

[DEPRECATED] Annotation based intent builder for Android activities and services

Genetic Map Comparison

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Version 2.1.0 released

Inference of switch-like differential expression along single-cell trajectories

Android constants wrapped in @IntDef annotations

A fast 23andMe genome text file parser, now superseded by arv

'Super CSV' extention library for annotation

An ontology of cell types

Pandas type stubs. Helps you type-check your code.

Fast hash function for DNA sequences

convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf

Fast alignment and preprocessing of chromatin profiles

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Generate PlantUML class diagrams to document your Python application.

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Assembling the cause of phenotypes and genotypes from NGS data

Detection of NCLDV signatures in 'omic data

An open-access bioinformatics text

Glue between SpringMVC @controllers and Alfresco

A plugin for video.js to add support for timeline moment/range comments and annotations

BACNET is a Java based platform to develop website for multi-omics analysis

Annotations for Sonata Admin

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Feature Annotation Location Description Ontology

PHANOTATE: a tool to annotate phage genomes.

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Android processing and secured library for managing SharedPreferences as key-value elements efficiently and structurally.

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Earl Grey: A fully automated TE curation and annotation pipeline

Compute N50/NG50 and auN/auNG

Find causal cell-types underlying complex trait genetics

(WIP) best-practices workflow for rare disease

The XP Framework is an all-purpose, object oriented PHP framework.

Set of annotations that aims to make your Android development experience easier along with lint checks.

Home of the Genomic Feature and Variation Ontology (GFVO)

Complex structural variant detection from WGS data

ActiveRecord schema annotations done right

Introduction to Cloud Computing for Genomics

A JavaScript library for web-based content editing.

Example client programs for Saphetor's VarSome annotation API

De novo genome assembly and multisample variant calling

Brings annotation support back to YouTube

A curated list of awesome bioinformatics software.