558 Open source projects that are alternatives of or similar to emp

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Software Papers as Software Modules: Towards a Culture of Reusable Results

A curated list of reproducible research case studies, projects, tutorials, and media

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Future Gadget Laboratory

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Execute and document benchmarks reproducibly.

Package an R workspace and all dependencies as a Docker container

Papers with code for single cell related papers

R package to interface with OpenML

Collection of popular and reproducible image denoising works.

Future Gadget Machine

Generate custom Docker and Singularity images, and minimize existing containers

Effortless method to record provenance in Python

Source code for the CERN Analysis Preservation portal

Examples and demos for ReproZip

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

🐳 Containerize R Markdown documents for continuous reproducibility

Avalanche: a End-to-End Library for Continual Learning.

Cloud Rapid Experimentation and Analysis Toolkit

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

An easy-to-use way for running Galaxy workflows.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Everware is about re-useable science, it allows people to jump right in to your research code.

A DSL for data-driven computational pipelines

rrtools: Tools for Writing Reproducible Research in R

Singularity: Application containers for Linux

Fully reproducible, open source scientific articles in LaTeX.

Short course on reproducible science: what, why, how

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

🔨 Make the exact performance measurements of the public methods for public classes using this NuGet Package with fluent interface. Requires .Net Standard 2.0+. It is an Open Source project under Apache-2.0 License.

Source code, data, and model results for "Fast non-linear gravity inversion in spherical coordinates with application to the South American Moho". Published in the Geophysical Journal International.

The main source repository for the Raysect project.

A comprehensive and long list of things a modern scientist is supposed to know

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

This repository provides the codes and data used in our paper "Human Activity Recognition Based on Wearable Sensor Data: A Standardization of the State-of-the-Art", where we implement and evaluate several state-of-the-art approaches, ranging from handcrafted-based methods to convolutional neural networks.

Python interface to the ProSAIL leaf/canopy reflectance model

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data

A package for designing compact and comprehensive capture probe sets.

Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:

IMS Machine Learning Lab publications.

Fitness landscape exploration sandbox for biological sequence design.

Course taught at the University of Bordeaux in the academic year 2017 for PhD students.

'Brilliantly wrong' blog, Machine Learning visualizations live here

Benchmarking Linear Assignment Problem Solvers

Collective Knowledge web extension to browse CK repositories, visualize interactive graphs and articles, render CK-based websites, implement simple web services with JSON API (for example to crowdsource experiments or unify access to DNN). Demos of interactive articles, graphs and crowdsourced experiments:

A builder for LaTeX, knitr, literate Agda, literate Haskell and Pweave that automatically builds dependencies.

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

A library of free open source icons for science illustrations in biology and chemistry

Erlang Performance Measurements

AMBER: Assessment of Metagenome BinnERs

🦕 A small lib to make your Deno benchmarking progress and results look pretty

A quick start project for polyaxon

The 2nd Annual American Museum of Natural History Hackathon produced by the BridgeUP: STEM program