655 Open source projects that are alternatives of or similar to fastq_utils

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

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Reference mapping for single-cell genomics

Collection of scripts for bacterial genomics

A package for designing compact and comprehensive capture probe sets.

Papers with code for single cell related papers

UGENE is free open-source cross-platform bioinformatics software

A Java API for high-throughput sequencing data (HTS) formats.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

Clone identification from single-cell data

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Official code repository for GATK versions 4 and up

A tool for semi-automatic cell type annotation

Fast and accurate sequence demultiplexing

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

A tool that allows to get UMI counts from a single cell protein assay

Efficient handling of FASTQ files from Python

Data intensive science for everyone.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

FASTQ compression

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

Command line utility for manipulating Illumina-generated FastQ files.

A simple tool to calculate reads number and total base count in FASTQ file

parallelized blat with multi-threads support

React Form Validation Demo

Method to optimally select samples for validation and resequencing

A library and command line interface for formatting and linting Dockerfiles.

Fork of CUDA GPU memtest 👓

Declarative data validation framework, written in Swift

OpenAPI 2.0/3.0.x intellisense, validator, linter, converter and resolver extension for Visual Studio Code

React hooks based form validation made for humans.

Yet another validation lib ;). Provides tools for general-purpose variable validation, function inputs/outputs validation as well as class fields validation. All entry points raise consistent ValidationError including all contextual details, with dynamic inheritance of ValueError/TypeError as appropriate.

Conditional validations for ember-changeset-validations

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

An extension to Android Design Support library's TextInputLayout with integrated validation support

Validate on a table in a DB, using dbplyr

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

Validate RDF data purely in JavaScript. An implementation of the W3C SHACL specification on top of the RDFJS stack.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

The Asset Validator is an editor tool for validating assets in the project and in scenes.

Get started with Umi3.js and Ant Design.

OpenAPI schema validator for Python

A simple plugin that enables response validation for Fastify.

Manuscript for functional prediction of transcriptomic “dark matter” across species

Server-Side Validation Library for PHP

Spring Batch Admin 是一个后端采用spring boot 2, spring security , oauth2, Spring data jpa 作为基础框架，集成了quartz 提供调度能力，集成了Spring batch 提供批处理能力的管理系统。系统旨在提供更底层数据展示以及常见批处理的配置以及运行能力。

A flask extension for api doc and validation of request&response.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Assembling the cause of phenotypes and genotypes from NGS data

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

Checkout API Client, Payment Form UI and Utilities

Parameter, query, form data validation and filtering for NodeJS.

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Quality control for your Liquibase scripts