632 Open source projects that are alternatives of or similar to Flowcraft

Airbyte is an open-source EL(T) platform that helps you replicate your data in your warehouses, lakes and databases.

wcm.io Jenkins Pipeline Library for CI/CD

Pan-genome wide association studies

ETL Library for Machine Learning - data pipelines, data munging and wrangling

A high-performance, Pythonic language for bioinformatics

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Realtime data processing and plotting pipelines in Python

A fast whole-genome aligner based on de Bruijn graphs

PySide based TACTIC client for maya, nuke, 3dsmax, houdini, etc

Distributed malware processing framework based on Python, Redis and MinIO.

Example client programs for Saphetor's VarSome annotation API

An interactive web tool for quality control of DNA sequencing data

Detection of NCLDV signatures in 'omic data

A server that pulls and parses MySQL binlog, pushs change data into different sinks like Kafka.

Pipeline for training LSA models using Scikit-Learn.

Robust and efficient workflows using a simple language agnostic approach

Basin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser

Bayesian haplotype-based mutation calling

De novo genome assembly and multisample variant calling

ATAC-seq peak-calling, QC and differential analysis pipeline

Re-mote operations using SSH and Re-gent

Chromosome visualization for the web

BACNET is a Java based platform to develop website for multi-omics analysis

The Darkest Pipeline - Multithreaded pipelines for modern C++

Sets up a mithril.js project with webpack

MISO: An open-source LIMS for NGS sequencing centres

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

A collaboratively written review paper on deep learning, genomics, and precision medicine

Sample Maven project with a Jenkinsfile doing git-flow based release management

The safe post-production pipeline - https://getavalon.github.io/2.0

A fast 23andMe genome text file parser, now superseded by arv

Stetl, Streaming ETL, is a lightweight geospatial processing and ETL framework written in Python.

Concoures CI Kube Deploment

A terminal filter to colorize output

Development repository for the Bioconductor package 'mixOmics '

GitLab Merger Bot

A powerful open source data warehouse system

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Example workflows for the drake R package

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Inference of switch-like differential expression along single-cell trajectories

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

Find causal cell-types underlying complex trait genetics

An open-source toolkit for large-scale genomic analysis

Home of the Genomic Feature and Variation Ontology (GFVO)

Framework for building fast genomics web tools with WebAssembly and WebWorkers

Introduction to Cloud Computing for Genomics

PipelineX: Python package to build ML pipelines for experimentation with Kedro, MLflow, and more

Shell supporting pipelines to and from multiple processes

Tired of pushing to test your .gitlab-ci.yml?

Bayesian genotyper for structural variants

A React web application to query and share any PostgreSQL database.

annotate a VCF with other VCFs/BEDs/tabixed files

A simple Spark-powered ETL framework that just works 🍺

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Fast genome-wide functional annotation through orthology assignment

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances