632 Open source projects that are alternatives of or similar to Flowcraft

Analysis pipelines for sequencing data

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Genome Annotation Without Nightmares

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

🔬 BEDOPS: high-performance genomic feature operations

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Data intensive science for everyone.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Deep learning infrastructure for bioinformatics

云研发，是一种生于云上的闭环 + 代码化的软件开发方式。它可以让业务人员、开发人员、运营人员等在同一个云端共同协作、透明化地完成整个软件的生命周期（需求、设计、编码、构建、部署、运营），而非相互隔离，又或者是借助于多个软件才能完成工作。

Kubernetes operator to manage installation, updation and uninstallation of tektoncd projects (pipeline, …)

Learn how to build a CI/CD pipeline for SAM-based applications

A hands-on DevOps course covering the culture, methods and repeated practices of modern software development involving Packer, Vagrant, VirtualBox, Ansible, Kubernetes, K3s, MetalLB, Traefik, Docker-Compose, Docker, Taiga, GitLab, Drone CI, SonarQube, Selenium, InSpec, Alpine 3.10, Ubuntu-bionic, CentOS 7...

Reads simulator

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Fluid dynamics component of Chemical Engineering Design Library (ChEDL)

Rapid large-scale prokaryote pan genome analysis

Pipeline Extension for Live Trading

Dashboard for your Deployment pipeline https://dashboardhub.io/

LAMA - automatic model creation framework

A Drone plugin for caching current workspace files between builds to reduce your build times

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Tools to work with variant call format files

A server that pulls and parses MySQL binlog, pushs change data into different sinks like Kafka.

Chromosome visualization for the web

The safe post-production pipeline - https://getavalon.github.io/2.0

A powerful open source data warehouse system

An open-source toolkit for large-scale genomic analysis

Ten Quick Tips for Deep Learning in Biology

spacy-wordnet creates annotations that easily allow the use of wordnet and wordnet domains by using the nltk wordnet interface

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Elastic Crontab System 简单易用的分布式定时任务管理系统

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Open solution to the Toxic Comment Classification Challenge

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

mito ETL tool

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

Viral genomics analysis pipelines

An end-to-end machine learning and data mining framework on Hadoop

Machine Learning Pipelines for Kubeflow

Cloud ready pure-python streaming data pipeline library

Python library for creating data pipelines with chain functional programming

c++ LINQ -like library of higher-order functions for data manipulation

☔️ => ⛅️ => ☀️

pypyr task-runner cli & api for automation pipelines. Automate anything by combining commands, different scripts in different languages & applications into one pipeline process.

structural variant calling and genotyping with existing tools, but, smoothly.

Machine learning platform for Web developers

Function Composition for OpenFaaS

🔊 Play sounds while and after shell jobs complete

Deploy machine learning projects developed in Python, to Kubernetes. Accelerated MLOps 🚀

Jenkins实践文档 最新站点地址: http://www.idevops.site

GenomeTools genome analysis system.

A repository for setting up a RNAseq workflow

Genomic Data Retrieval with R

Demo of Jenkins Configuration-As-Code with Docker and Groovy Hook Scripts

VectorSQL is a free analytics DBMS for IoT & Big Data, compatible with ClickHouse.

A curated list of bioinformatics bench-marking papers and resources.