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pyprophetPyProphet: Semi-supervised learning and scoring of OpenSWATH results.
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pmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …
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pDeeppDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
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QCxMSQuantum mechanic mass spectrometry calculation program
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IDBacAppA MALDI Mass Spectrometry Bioinformatics Platform
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OrgMassSpecROrganic/biological mass spectrometry data analysis (development version).
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philosopherA complete toolkit for shotgun proteomics data analysis
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rawDiagBrings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.
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ElMavenLC-MS data processing tool for large-scale metabolomics experiments.
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PredFullThis work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
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MALDIquantQuantitative Analysis of Mass Spectrometry Data
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mzQCReporting and exchange format for mass spectrometry quality control data
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Informed-ProteomicsTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
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CoreMSCoreMS is a comprehensive mass spectrometry software framework
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MSFraggerUltrafast, comprehensive peptide identification for mass spectrometry–based proteomics
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RforProteomicsUsing R and Bioconductor packages for the analysis and comprehension of proteomics data.
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batmassMass spectrometry data visualization
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mzLibLibrary for mass spectrometry projects
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tools-metabolomicsGalaxy tools for metabolomics maintained by Workflow4Metabolomics
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siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
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QFeaturesQuantitative features for mass spectrometry data
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pyqmspyQms, generalized, fast and accurate mass spectrometry data quantification
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pFind3No description or website provided.
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isotopeHaskell library containing isotopic masses and relative abundances for elements from Hydrogen to Bismuth and Thorium and Uranium (excluding Technetium and promethium), i.e., all elements with naturally-occurring isotopes.
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