Top 32 mass-spectrometry open source projects

Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

CoreMS is a comprehensive mass spectrometry software framework

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

Mass spectrometry data visualization

Library for mass spectrometry projects

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Quantitative features for mass spectrometry data

Public Workflows at GNPS

pyQms, generalized, fast and accurate mass spectrometry data quantification

No description or website provided.

Haskell library containing isotopic masses and relative abundances for elements from Hydrogen to Bismuth and Thorium and Uranium (excluding Technetium and promethium), i.e., all elements with naturally-occurring isotopes.

Glycan Analysis and Glycoinformatics Library for Python

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

The repo for LFQ-Analyst

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

A library for deisotoping and charge state deconvolution of complex mass spectra

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …

Thermo MSFileReader Python bindings

pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

Quantum mechanic mass spectrometry calculation program

A MALDI Mass Spectrometry Bioinformatics Platform

Organic/biological mass spectrometry data analysis (development version).

A complete toolkit for shotgun proteomics data analysis

Brings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.

LC-MS data processing tool for large-scale metabolomics experiments.

This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network

Quantitative Analysis of Mass Spectrometry Data

Reporting and exchange format for mass spectrometry quality control data