4513 Open source projects that are alternatives of or similar to Intermine

Python library and web service for Open Source Software Health and Sustainability metrics & data collection.

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A modern genome browser built with JavaScript and HTML5.

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A list of web-based interactive biological data visualizations.

Scripts to download genomes from the NCBI FTP servers

Javascript full-stack framework for Big Data visualisation and analysis

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karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

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A cool place to store your Hi-C

GraphQL is a new way of communicating with your server. It eliminates the problems of over- and under-fetching, incorporates strong data types, has built-in introspection, documentation and deprecation capabilities, and is implemented in many programming languages. This all leads to gloriously low-latency user experiences, better developer experiences, and much increased productivity. Because of all this, GraphQL is typically used as a replacement for (or companion to) RESTful API services.

📔 Curated list of resources: books, videos, articles, speaker decks, tools about using the JAMstack (A modern web development architecture for creating fast, secure and dynamic websites)

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

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R for Reproducible Scientific Analysis

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Code examples of fast and simple k-mer counters for tutorial purposes

Bayesian haplotype-based mutation calling

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Plotting and Programming in Python

Laravel FREE E-Commerce Software

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Data Analysis and Visualization in Python for Ecologists

NGLess: NGS with less work

This is a starter project for creating open-source libraries for Angular. It is a full fledged Angular workspace with demo application and easy library addition. It is designed to be used for open-sourcing libraries on Github and has everything you'd need ready for CI, code coverage, SSR testing, StackBlitz demo deployment and more.

A collection of scripts and notes related to genomics and bioinformatics

Free open source client for OctoPrint

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nim wrapper for htslib for parsing genomics data files

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Unofficial C# Library of Hong Kong Observatory API

Starter Kit and tooling for authoring GraphQL/REST API backends with subZero

Models of COVID-19 outbreak trajectories and hospital demand

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A curated list of bioinformatics bench-marking papers and resources.

Node.js, Express.js, Sequelize.js and PostgreSQL RESTful API

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© Copyright Header is a utility to manipulate software licenses on source code.

Curated (meta)list of resources for Biology.

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Community driven open source accelerator

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This repository is in development phase and will soon provide you with c++ code of various data structures and algorithms

The open source Tab Manager Extension for Safari.