All Projects → Kmer Cnt → Similar Projects or Alternatives

569 Open source projects that are alternatives of or similar to Kmer Cnt

Fusiondirect.jl
(No maintenance) Detect gene fusion directly from raw fastq files
Stars: ✭ 23 (-81.45%)
Mutual labels:  bioinformatics
Coursera Specializations
Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody
Stars: ✭ 72 (-41.94%)
Mutual labels:  bioinformatics
Bgdata
A Suite of Packages for Analysis of Big Genomic Data
Stars: ✭ 19 (-84.68%)
Mutual labels:  genomics
Getting Started With Genomics Tools And Resources
Unix, R and python tools for genomics and data science
Stars: ✭ 587 (+373.39%)
Mutual labels:  bioinformatics
Helmsman
highly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (-84.68%)
Mutual labels:  bioinformatics
Globalbioticinteractions
Global Biotic Interactions provides access to existing species interaction datasets
Stars: ✭ 71 (-42.74%)
Mutual labels:  bioinformatics
Cookiecutter
DEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-85.48%)
Mutual labels:  bioinformatics
Swarm
A robust and fast clustering method for amplicon-based studies
Stars: ✭ 88 (-29.03%)
Mutual labels:  bioinformatics
Lambda
LAMBDA – the Local Aligner for Massive Biological DatA
Stars: ✭ 59 (-52.42%)
Mutual labels:  bioinformatics
Cs Video Courses
List of Computer Science courses with video lectures.
Stars: ✭ 27,209 (+21842.74%)
Mutual labels:  bioinformatics
Pybedgraph
A Python package for fast operations on 1-dimensional genomic signal tracks
Stars: ✭ 17 (-86.29%)
Mutual labels:  bioinformatics
Charger
Characterization of Germline variants
Stars: ✭ 69 (-44.35%)
Mutual labels:  bioinformatics
Riddle
Race and ethnicity Imputation from Disease history with Deep LEarning
Stars: ✭ 91 (-26.61%)
Mutual labels:  bioinformatics
Seqtk
Toolkit for processing sequences in FASTA/Q formats
Stars: ✭ 799 (+544.35%)
Mutual labels:  bioinformatics
Htslib
C library for high-throughput sequencing data formats
Stars: ✭ 529 (+326.61%)
Mutual labels:  bioinformatics
Biostar Central
Biostar Q&A
Stars: ✭ 488 (+293.55%)
Mutual labels:  bioinformatics
Bioawk
BWK awk modified for biological data
Stars: ✭ 462 (+272.58%)
Mutual labels:  bioinformatics
React Plotly.js
A plotly.js React component from Plotly 📈
Stars: ✭ 701 (+465.32%)
Mutual labels:  bioinformatics
Deep Review
A collaboratively written review paper on deep learning, genomics, and precision medicine
Stars: ✭ 1,141 (+820.16%)
Mutual labels:  genomics
Salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Stars: ✭ 456 (+267.74%)
Mutual labels:  bioinformatics
Seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Stars: ✭ 607 (+389.52%)
Mutual labels:  bioinformatics
Terpene Profile Parser For Cannabis Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
Stars: ✭ 63 (-49.19%)
Mutual labels:  bioinformatics
Csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
Stars: ✭ 566 (+356.45%)
Mutual labels:  bioinformatics
Taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit
Stars: ✭ 109 (-12.1%)
Mutual labels:  bioinformatics
Qiime16stutorial
A tutorial on methods of 16S analysis with QIIME 1
Stars: ✭ 59 (-52.42%)
Mutual labels:  bioinformatics
Vsearch
Versatile open-source tool for microbiome analysis
Stars: ✭ 444 (+258.06%)
Mutual labels:  bioinformatics
Slivar
variant expressions, annotation, and filtering for great good.
Stars: ✭ 110 (-11.29%)
Mutual labels:  genomics
Decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Stars: ✭ 86 (-30.65%)
Mutual labels:  bioinformatics
Pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
Stars: ✭ 57 (-54.03%)
Mutual labels:  bioinformatics
Mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Stars: ✭ 441 (+255.65%)
Mutual labels:  bioinformatics
Molgenis
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Stars: ✭ 88 (-29.03%)
Mutual labels:  bioinformatics
Mixomics
Development repository for the Bioconductor package 'mixOmics '
Stars: ✭ 58 (-53.23%)
Mutual labels:  genomics
Cwl Svg
A library for generating an interactive SVG visualization of CWL workflows
Stars: ✭ 57 (-54.03%)
Mutual labels:  bioinformatics
Wdl
Workflow Description Language - Specification and Implementations
Stars: ✭ 438 (+253.23%)
Mutual labels:  bioinformatics
Circosjs
d3 library to build circular graphs
Stars: ✭ 436 (+251.61%)
Mutual labels:  bioinformatics
Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Stars: ✭ 1,266 (+920.97%)
Mutual labels:  bioinformatics
Python biologist
Python Programming for Biologists
Stars: ✭ 55 (-55.65%)
Mutual labels:  bioinformatics
Containers
Bioinformatics containers
Stars: ✭ 435 (+250.81%)
Mutual labels:  bioinformatics
Rush
A cross-platform command-line tool for executing jobs in parallel
Stars: ✭ 421 (+239.52%)
Mutual labels:  bioinformatics
Genozip
Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
Stars: ✭ 53 (-57.26%)
Mutual labels:  genomics
Goatools
Python library to handle Gene Ontology (GO) terms
Stars: ✭ 415 (+234.68%)
Mutual labels:  genomics
Vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
Stars: ✭ 414 (+233.87%)
Mutual labels:  genomics
Sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
Stars: ✭ 108 (-12.9%)
Mutual labels:  bioinformatics
Dkm
Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
Stars: ✭ 86 (-30.65%)
Mutual labels:  genomics
Sv2
Support Vector Structural Variation Genotyper
Stars: ✭ 52 (-58.06%)
Mutual labels:  bioinformatics
Sambamba
Tools for working with SAM/BAM data
Stars: ✭ 409 (+229.84%)
Mutual labels:  bioinformatics
Emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Stars: ✭ 51 (-58.87%)
Mutual labels:  bioinformatics
Clusterflow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Stars: ✭ 85 (-31.45%)
Mutual labels:  bioinformatics
Aioli
Framework for building fast genomics web tools with WebAssembly and WebWorkers
Stars: ✭ 51 (-58.87%)
Mutual labels:  genomics
Nanopolish
Signal-level algorithms for MinION data
Stars: ✭ 367 (+195.97%)
Mutual labels:  bioinformatics
Yacrd
Yet Another Chimeric Read Detector
Stars: ✭ 49 (-60.48%)
Mutual labels:  bioinformatics
Plantcv
Plant image analysis using OpenCV
Stars: ✭ 352 (+183.87%)
Mutual labels:  bioinformatics
Fqtools
An efficient FASTQ manipulation suite
Stars: ✭ 114 (-8.06%)
Mutual labels:  bioinformatics
Indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Stars: ✭ 105 (-15.32%)
Mutual labels:  bioinformatics
Vdjtools
Post-analysis of immune repertoire sequencing data
Stars: ✭ 85 (-31.45%)
Mutual labels:  bioinformatics
Deeppurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Stars: ✭ 342 (+175.81%)
Mutual labels:  bioinformatics
Cutadapt
Cutadapt removes adapter sequences from sequencing reads
Stars: ✭ 340 (+174.19%)
Mutual labels:  bioinformatics
Quota Alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Stars: ✭ 47 (-62.1%)
Mutual labels:  genomics
Grakel
A scikit-learn compatible library for graph kernels
Stars: ✭ 330 (+166.13%)
Mutual labels:  bioinformatics
Obofoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Stars: ✭ 85 (-31.45%)
Mutual labels:  bioinformatics
121-180 of 569 similar projects