447 Open source projects that are alternatives of or similar to microbiomeMarker

MaAsLin2: Microbiome Multivariate Association with Linear Models

Metagenomics calibration R package

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

Schloss Lab Tools for Reproducible Microbiome Research 💩

Compare different differential abundance and expression methods

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

A package for designing compact and comprehensive capture probe sets.

LCARS aesthetic for Shiny

Bring a functional programming mindset to R Markdown document generation

CmdStanR: the R interface to CmdStan

R interface to the fishbase.org database

🗾 Create Japansese Administration Area Maps

powerlmm R package for power calculations for two- and three-level longitudinal multilevel/linear mixed models.

Humane encryption

ParamHelpers Next Generation

Download Logs from the RStudio CRAN Mirror

API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R

GraphBin: Refined binning of metagenomic contigs using assembly graphs

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/

R wrapper for antiword utility

R package to create generative art.

An R wrapper for CanIStream.It API

Generate geographic and non-geographic map tiles from R

⛔ ARCHIVED ⛔ Set Up 'Travis' for Testing and Deployment

Custom themes for base plots

Helper functions for brmsfit objects (DEPRECATED)

Psychometric meta-analysis toolkit

A set of tools for R that enhance reproducibility beyond package management

Various functions for analysis of microbial community data

Task View: PackageDevelopment

Store sensitive data such as API tokens

📦 R package to simulate neutral landscape models 🏔

⛔ ARCHIVED ⛔ R package for the Geoparser.io API

Adding progress bar to '*apply' functions in R

Easier CUSUM control charts. Returns simple CUSUM statistics, CUSUMs with control limit calculations, and function to generate faceted CUSUM Control Charts

exploratory and interactive microbiome analyses based on heatmaps

R package providing fast nearest neighbour search (wraps ANN library)

Visualize microbiome data with black magic ggtree

User-Friendly R Package for Supervised Machine Learning Pipelines

Lightweight infrastructure to handle multiple rmarkdown reports

R Interface to Protocol Buffers

R package to position animals with solar geolocation archival tags

Create simple packages which pass R CMD check

Improving genome bins through the combination of different binning programs

Creating R package to code free text gender responses

✈️ ☀️ R package for accessing ASOS data via the Iowa Environment Mesonet ☁️ ✈️

An R package for the Wikidata Query Service API

{rtweet} helpers for automating large or time-consuming downloads

R library to access species interaction data of http://globalbioticinteractions.org

R Package for individual based epidemiological models

Log R Events and R Usage to Google Analytics

🌶️ Create lightweight schema.org descriptions of your datasets

Package with functions to handle network data and run Infomap, inspired by ecological networks

A Teradata Backend for dplyr

🎓Use the R Console as an interactive learning environment

A programmatic interface to iNaturalist

Easy Hyper Parameter Optimization with mlr and mlrMBO.

💪 🤔 Modern Super Learning with Machine Learning Pipelines