Brunch🍴 Web applications made easy. Since 2011.
Stars: ✭ 6,801 (+21838.71%)
MachineMachine is a workflow/pipeline library for processing data
Stars: ✭ 78 (+151.61%)
bistroA library to build and execute typed scientific workflows
Stars: ✭ 43 (+38.71%)
snorkelingExtracting biomedical relationships from literature with Snorkel 🏊
Stars: ✭ 56 (+80.65%)
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+261.29%)
PipelinePipeline is a package to build multi-staged concurrent workflows with a centralized logging output.
Stars: ✭ 433 (+1296.77%)
cli-property-managerUse this Property Manager CLI to automate Akamai property changes and deployments across many environments.
Stars: ✭ 22 (-29.03%)
Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: ✭ 170 (+448.39%)
AtacseqATAC-seq peak-calling, QC and differential analysis pipeline
Stars: ✭ 72 (+132.26%)
DrakeAn R-focused pipeline toolkit for reproducibility and high-performance computing
Stars: ✭ 1,301 (+4096.77%)
DNAscanDNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
Stars: ✭ 36 (+16.13%)
TargetsFunction-oriented Make-like declarative workflows for R
Stars: ✭ 293 (+845.16%)
VistrailsVisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Stars: ✭ 94 (+203.23%)
FlowrRobust and efficient workflows using a simple language agnostic approach
Stars: ✭ 73 (+135.48%)
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+2519.35%)
Drake ExamplesExample workflows for the drake R package
Stars: ✭ 57 (+83.87%)
ScipipeRobust, flexible and resource-efficient pipelines using Go and the commandline
Stars: ✭ 826 (+2564.52%)
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-41.94%)
Jenkins Workflowcontains handy groovy workflow-libs scripts
Stars: ✭ 41 (+32.26%)
BatchflowBatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.
Stars: ✭ 156 (+403.23%)
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: ✭ 124 (+300%)
RnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Stars: ✭ 305 (+883.87%)
ToilA scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Stars: ✭ 733 (+2264.52%)
VectorA reliable, high-performance tool for building observability data pipelines.
Stars: ✭ 8,736 (+28080.65%)
FugitiveSimple command line tool to make git more intuitive, along with useful GitHub addons.
Stars: ✭ 20 (-35.48%)
Feflow🚀 A command line tool aims to improve front-end engineer workflow and standard, powered by TypeScript.
Stars: ✭ 942 (+2938.71%)
MicroflowMicroservice orchestration inspired by AWS Step functions and Apache Airflow
Stars: ✭ 24 (-22.58%)
Steppy ToolkitCurated set of transformers that make your work with steppy faster and more effective 🔭
Stars: ✭ 21 (-32.26%)
Actions Toolkit🛠 A toolkit for building GitHub Actions in Node.js
Stars: ✭ 848 (+2635.48%)
Sv CallersSnakemake-based workflow for detecting structural variants in WGS data
Stars: ✭ 28 (-9.68%)
DartSelf-service data workflow management
Stars: ✭ 15 (-51.61%)
Wfl A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs
Stars: ✭ 30 (-3.23%)
Alfred UnicodePreview Unicode characters and emoji in Alfred
Stars: ✭ 23 (-25.81%)
Pytorch ToolbeltPyTorch extensions for fast R&D prototyping and Kaggle farming
Stars: ✭ 942 (+2938.71%)
GollumAn n:m message multiplexer written in Go
Stars: ✭ 883 (+2748.39%)
GvannoGeneric germline variant annotation pipeline
Stars: ✭ 23 (-25.81%)
Perl WorkflowSimple, flexible system to implement workflows
Stars: ✭ 10 (-67.74%)
Hzdtf.foundation.framework基础框架系统,支持.NET和.NET Core平台,语言:C#,DB支持MySql和SqlServer,主要功能有抽象持久化、服务层,将业务基本的增删改查抽离复用;提供代码生成器从DB生成实体、持久化、服务以及MVC控制器,每层依赖接口,并需要在客户端将对应实现层用Autofac程序集依赖注入,用AOP提供日志跟踪、事务、模型验证等。对Autofac、Redis、RabbitMQ封装扩展;DB访问提供自动主从访问,Redis客户端分区。特别适合管理系统。
Stars: ✭ 22 (-29.03%)
GitprQuick reference guide on fork and pull request workflow
Stars: ✭ 902 (+2809.68%)
Param pipeparameterized pipe in elixir: |n>
Stars: ✭ 14 (-54.84%)
CloudneoCWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Stars: ✭ 13 (-58.06%)
BagofconceptsPython implementation of bag-of-concepts
Stars: ✭ 18 (-41.94%)
Wf wcf samplesWindows Communication Foundation (WCF) and Windows Workflow Foundation (WF) Samples
Stars: ✭ 17 (-45.16%)
SpiffworkflowA powerful workflow engine implemented in pure Python
Stars: ✭ 959 (+2993.55%)
SpiderA configurable web spider with a easy-to-use web console
Stars: ✭ 954 (+2977.42%)
Blog Post WorkflowShow your latest blog posts from any sources or StackOverflow activity or Youtube Videos on your GitHub profile/project readme automatically using the RSS feed
Stars: ✭ 910 (+2835.48%)
PpipeA simple and lightweight Rust library for making iterator pipelines concurrent
Stars: ✭ 13 (-58.06%)
GushFast and distributed workflow runner using ActiveJob and Redis
Stars: ✭ 894 (+2783.87%)
SootyThe SOC Analysts all-in-one CLI tool to automate and speed up workflow.
Stars: ✭ 867 (+2696.77%)
AutophraseAutoPhrase: Automated Phrase Mining from Massive Text Corpora
Stars: ✭ 835 (+2593.55%)
Codevar生成可用的代码变量 (CodeVar that return u a better variable from Chinese to English . )
Stars: ✭ 834 (+2590.32%)
ProcessmakerGLPI plugin that provides an interface with ProcessMaker (http://www.processmaker.com/)
Stars: ✭ 21 (-32.26%)
WorkflowA Swift and Kotlin library for making composable state machines, and UIs driven by those state machines.
Stars: ✭ 860 (+2674.19%)
DocsLightweight document management system packed with all the features you can expect from big expensive solutions
Stars: ✭ 827 (+2567.74%)
MqrunAutomate MaxQuant
Stars: ✭ 10 (-67.74%)