33 Open source projects that are alternatives of or similar to pyflow-ATACseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

nucleosome calling using ATAC-seq

🐍 Snakefiles for common RNA-seq data analysis workflows.

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

Basic workflow for ATAC-seq analysis

Amplicon sequence processing workflow using QIIME 2 and Snakemake

CWL tools and workflows for GGR

[MIRROR] Emacs support for Snakemake

A robust, extensible metagenomics pipeline

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Analysing Capture Seq Count Data

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

A graphical user interface for distributed data processing of high throughput genomics

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Multi-omics analysis protocols by Lyu.

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

Snakemake based pipeline for RNA-Seq analysis

Monitor computational workflows in real time

A workflow for creating small NGS test data sets, useful for continuous integration.

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

chromatin Variability Across Regions (of the genome!)

HMMRATAC peak caller for ATAC-seq data

The uncompromising Snakemake code formatter

Documentation of the Snakemake-Workflows project

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Close assembly gaps using long-reads at high accuracy.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

No description or website provided.

A toolkit for QC and visualization of ATAC-seq results.

Benchmarking computational single cell ATAC-seq methods