DEGreportCreate a cromphensive report of DEG list coming from any analysis of RNAseq data
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Mutual labels: rna-seq, differential-expression
diffexprPorting DESeq2 and DEXSeq into python via rpy2
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Mutual labels: rna-seq, differential-expression
kallistobustoolskallisto | bustools workflow for pre-processing single-cell RNA-seq data
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Mutual labels: rna-seq, kallisto
idealInteractive Differential Expression AnaLysis - DE made accessible and reproducible
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Mutual labels: rna-seq, differential-expression
snakefiles🐍 Snakefiles for common RNA-seq data analysis workflows.
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Mutual labels: rna-seq, snakemake
tailseekerSoftware for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
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Mutual labels: rna-seq, snakemake
biomisc Rcommand line bioinformatic scripts written in R
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Mutual labels: differential-expression
scadenDeep Learning based cell composition analysis with Scaden.
Stars: ✭ 61 (+8.93%)
Mutual labels: rna-seq
benchmark VAEUnifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
Stars: ✭ 1,211 (+2062.5%)
Mutual labels: reproducibility
hydra-zenPythonic functions for creating and enhancing Hydra applications
Stars: ✭ 165 (+194.64%)
Mutual labels: reproducibility
kanaSingle cell analysis in the browser
Stars: ✭ 81 (+44.64%)
Mutual labels: rna-seq
Seurat-to-RNA-VelocityA guide to using a Seurat object in conjunction with RNA Velocity
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Mutual labels: kallisto
ORNAFast in-silico normalization algorithm for NGS data
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Mutual labels: rna-seq
software-devCoding Standards for the USC Biostats group
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Mutual labels: reproducibility
NGSNext-Gen Sequencing tools from the Horvath Lab
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Mutual labels: rna-seq
TCC-GUI📊 Graphical User Interface for TCC package
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Mutual labels: rna-seq
ngs-test-dataA workflow for creating small NGS test data sets, useful for continuous integration.
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Mutual labels: snakemake
rna-seq-snakemakeSnakemake based pipeline for RNA-Seq analysis
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Mutual labels: snakemake
Protocols-4pubMulti-omics analysis protocols by Lyu.
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Mutual labels: rna-seq