138 Open source projects that are alternatives of or similar to pytask

Fully reproducible, open source scientific articles in LaTeX.

WRENCH: Cyberinfrastructure Simulation Workbench

Reproducible R Scripts Via Date Controlled Installing & Loading of CRAN & Git Packages

Manager for multi-container computing environments

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Public scenarios to crowdsource experiments (such as DNN crowd-benchmarking and crowd-tuning) using Collective Knowledge Framework across diverse mobile devices provided by volunteers. Results are continuously aggregated at the open repository of knowledge:

Package an R workspace and all dependencies as a Docker container

Code for "Depth Uncertainty in Neural Networks" (https://arxiv.org/abs/2006.08437)

🐳 Containerize R Markdown documents for continuous reproducibility

Coding Standards for the USC Biostats group

An R package for data screening

Kervolution implementation using TF2.0

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Reproducible Research with Rmarkdown: data management, analysis, and reporting all-in-one

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

Rapid and flexible acquisition, analysis, fitting, and plotting in Python. Designed for scientific laboratories.

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Cookbook examples for the Insight Toolkit documented with Sphinx

Generate custom Docker and Singularity images, and minimize existing containers

Deploy a BinderHub from scratch on Microsoft Azure

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

Cross-disease comparison of case-control gut microbiome studies

project page for creating a guide to reproducible research

⛔ ARCHIVED ⛔

Collection of popular and reproducible image denoising works.

Creating virtual environments for R.

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models.

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

📦 Create a package or compendium structure

Open Plant Pathology website

Framework for Analysis of Class-Incremental Learning with 12 state-of-the-art methods and 3 baselines.

A minimal example data analysis project with the targets R package

Short course on the targets R package

Platform for integrating genomic analysis with Jupyter Notebooks.

creating optimal conditions for reproducibility

JavaScript VisualizationTools

The GenePattern Server web application

Future Gadget Laboratory

Open solution to the Google AI Object Detection Challenge 🍁

Live code in Pandoc Markdown

A setup script to generate ITK Python Wheels

Avalanche: a End-to-End Library for Continual Learning.

A Deep Learning Approach to Ultrasound Image Recovery

A Collection of Variational Autoencoders (VAE) in PyTorch.

Guide for Reproducible Research and Data Science in Jupyter Notebooks

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A robust, extensible metagenomics pipeline

Lightweight, Python library for fast and reproducible experimentation 🔬

Collective Knowledge repository with actions to unify the access to different predictive analytics engines (scipy, R, DNN) from software, command line and web-services via CK JSON API:

R interface to the Open Science Framework (OSF)

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

#nowplaying-RS: Music Recommendation using Factorization Machines

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

Monitor computational workflows in real time

Everware is about re-useable science, it allows people to jump right in to your research code.

An easy-to-use way for running Galaxy workflows.