442 Open source projects that are alternatives of or similar to pytopomat

A FORTRAN module to write Numpy's *.npy and *.npz files

Physical simulations on Unity

Implementation of a fast exponential matrix for large matrices (full and sparse)

Multi-Joint dynamics with Contact. A general purpose physics simulator.

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

GraphNVP: An Invertible Flow Model for Generating Molecular Graphs

Automated reaction pathway search for gas-phase molecules

A 2D rust game engine focused on portability.

A simple Kalman Filter built in TensorFlow

Python for Materials Machine Learning, Materials Descriptors, Machine Learning Force Fields, Deep Learning, etc.

julia package for working with Keldysh Green's functions

3D-printable hexagonal mirror array capable of reflecting sunlight into arbitrary patterns

Graph-based molecule modeling toolkit for cheminformatics

Numerical simulation of magnetohydrodynamics.

A python package for accessing various properties of elements, ions and isotopes in the periodic table of elements.

The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.

A Python Library for Energy Profile and Abstract Grid(2D/3D) plotting

A program implementing Metropolis Monte Carlo for the 2D square-lattice Ising model and the spin block renormalization

Physics module for Whitestorm.js [Beta]

The amazing Reaction Mechanism Simulator for simulating large chemical kinetic mechanisms

QE-GIPAW for Quantum-Espresso (official repository)

'Brilliantly wrong' blog, Machine Learning visualizations live here

experimenting with physics simulation

Code repository for the massively-parallel framework for maximum-likelihood fits, implemented in CUDA/OpenMP

LUMIN - a deep learning and data science ecosystem for high-energy physics.

A library of free open source icons for science illustrations in biology and chemistry

🏄 A list of awesome resources I used to study Physics.

A cross-platform, realtime physics engine for all .NET apps.

Physical quantities and units

This plugin allows you to essentially create PxScene or Physic Scenes by placing an Actor, and adding other Static Mesh Components and soon Skeletal Mesh components within this space. Adding Constraints, and Forces will work as expected, but now with the additional layer of abstraction so that simulation can be anchored to a transform.

物理引擎学习。详解碰撞检测原理，自己实现一个简易的物理引擎。

サイエンス、テクノロジー、エンジニアリング関連の情報を記載したノート（忘備録）です。

Using Grab Passes for VRChat

A 3D electromagnetic FDTD simulator written in Python

Kosm for Android source code

An interactive structure/property explorer for materials and molecules

Lessons learnt from hunting jitter issues

Web Interface for ChEMBL @ EMBL-EBI

SpinW Matlab library for spin wave calculation

2d 纯计算高性能刚体物理引擎

The Virtual Lab for Physics

X-ray diffraction data analysis for high pressure and high temperature experiments

An advanced C++ 3D game engine powering an in-production game yet to be announced

Python for heliospheric and planetary physics

HARFANG 3D source code public repository

✨ A diffraction simulator for exploring and visualizing physical optics.

All of my math stuff from grad school.

A Python wrapper for the Chemistry Development Kit (CDK)

Exercises and notes for N.G. Van Kampen's Stochastic Processes in Physics and Chemistry

A library to interface molecules and machine learning.

Public release of data and code for materials synthesis generation

This is my physics learning path. Best courses I've found to learn physics online.

A simple, physics-based animation library 🎼

UF3: a python library for generating ultra-fast interatomic potentials

This is to facilitate the “Machine Learning in Physics” course that I am teaching at Sharif University of Technology for winter-19 semester. For more information, see the course page at

Chemistry, Gamified

WebGL only 2D game engine using Godot as the visual editor

Interactive Periodic Table which I made with React.js and CSS Grid. I was trying to memorize all the elements and thought, hey can I make this peculiar layout with my current CSS skills? I finally did

🧪 A comprehensive chemistry library for Python.