BgdataA Suite of Packages for Analysis of Big Genomic Data
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BioBioinformatics library for .NET
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Fastq.bioAn interactive web tool for quality control of DNA sequencing data
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Deep ReviewA collaboratively written review paper on deep learning, genomics, and precision medicine
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PowerlawThis package implements both the discrete and continuous maximum likelihood estimators for fitting the power-law distribution to data. Additionally, a goodness-of-fit based approach is used to estimate the lower cutoff for the scaling region.
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Colourlovers🎨 📦 R Client for the COLOURlovers API
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BgtFlexible genotype query among 30,000+ samples whole-genome
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MsprimeSimulate genealogical trees and genomic sequence data using population genetic models
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ProcDisplay and analyze ROC curves in R and S+
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ModulesModules in R
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AioliFramework for building fast genomics web tools with WebAssembly and WebWorkers
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ScoaryPan-genome wide association studies
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RsqlserverSQL Server DBI for R, based on the jTDS driver
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Startup🔧 R package: startup - Friendly R Startup Configuration
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FlowrRobust and efficient workflows using a simple language agnostic approach
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RefinrCluster and merge similar char values: an R implementation of Open Refine clustering algorithms
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BluegenesA friendly next-generation interface for Genomic data discovery powered by InterMine
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CryptoCryptocurrency Historical Market Data R Package
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Dna NnModel and predict short DNA sequence features with neural networks
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Foghorn📢 🚢 R package to summarize CRAN Check Results in the Terminal
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SmudgeplotInference of ploidy and heterozygosity structure using whole genome sequencing data
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LinlLinl Is Not Letter -- Markdown-based LaTeX Letter Template
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DramDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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LabelledManipulating labelled vectors in R
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Openml RR package to interface with OpenML
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RintrojsWrapper for the Intro.js library
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MarkovchainEasy Handling Discrete Time Markov Chains
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Slivarvariant expressions, annotation, and filtering for great good.
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SvtyperBayesian genotyper for structural variants
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Mschart📊 mschart: office charts from R
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SibeliazA fast whole-genome aligner based on de Bruijn graphs
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RinsideSeamless embedding of R in C++ programs
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Volume approximationPractical volume computation and sampling in high dimensions
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ChangepointA place for the development version of the changepoint package on CRAN.
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PkgsearchSearch R packages on CRAN
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Shiny.i18nShiny applications internationalisation made easy
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GubbinsRapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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Openxlsxopenxlsx - a fast way to read and write complex xslx files
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BayesiantoolsGeneral-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
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ImputetsCRAN R Package: Time Series Missing Value Imputation
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FredrAn R client for the Federal Reserve Economic Data (FRED) API
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WooldridgeThe official R data package for "Introductory Econometrics: A Modern Approach". A vignette contains example models from each chapter.
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MixomicsDevelopment repository for the Bioconductor package 'mixOmics '
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GenomicsA collection of scripts and notes related to genomics and bioinformatics
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GenozipCompressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
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DkmDynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
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BlavaanAn R package for Bayesian structural equation modeling
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CgrangesA C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
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SeuratR toolkit for single cell genomics
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Quota AlignmentGuided synteny alignment between duplicated genomes (within specified quota constraint)
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AribaAntimicrobial Resistance Identification By Assembly
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SnsAnalysis pipelines for sequencing data
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TidytransitR package for working with the General Transit Feed Specification (GTFS)
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CoolerA cool place to store your Hi-C
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MlrMachine Learning in R
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