1292 Open source projects that are alternatives of or similar to Scipipe

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A lightweight parallel task engine

Tukio is an event based workflow generator library

🚥 Petrinet framework for PHP

a workflow engine

🍴 Web applications made easy. Since 2011.

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

contains handy groovy workflow-libs scripts

A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

An R-focused pipeline toolkit for reproducibility and high-performance computing

A simplified pipeline for ctDNA sequencing data analysis

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

piper - a distributed workflow engine

A collection of scripts and notes related to genomics and bioinformatics

The Chemistry Development Kit

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Lightweight workflow engine for .NET Standard

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

A curated list of Cheminformatics libraries and software.

🔬 BEDOPS: high-performance genomic feature operations

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

A distributed workflow runner focusing on performance and simplicity.

🚀 A shiny admin interface for django-river built with DRF, Vue & Vuetify

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

HyperFlow: a scientific workflow engine

Kogito examples - Kogito is a cloud-native business automation technology for building cloud-ready business applications.

Function-oriented Make-like declarative workflows for R

Open source remote collaboration platform used for configuring and deploying enterprise Workflow solutions.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Function Composition for OpenFaaS

Lightweight workflow engine

A simple finite state machine (FSM) with workflow character where you define your workflows in code.

Workflow engine for exploration of simulation models using high throughput computing

nFlow is a battle-proven solution for orchestrating business processes. It can be used as microservices orchestrator (Saga-pattern), as business process engine or as persistent finite-state machine.

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Check Wiki for details

Parallel programming with Python

Build workflows, activities, BPMN like processes, or state machines with PVM.

A modern Python package manager with PEP 582 support.

Declarative continuous deployment for Kubernetes.

Scripts to download genomes from the NCBI FTP servers

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

A Json based Rules Engine with extensive Dynamic expression support

A lightweight stream processing library for Go

Biostar Q&A

flowable workflow designer for Vue base on @antv/g6

Orchestra is a Robotic Process Automation system for orchestrating project teams of experts and machines.

A GitHub action to create a pull request for changes to your repository in the actions workspace

Release pull request generator

Simple flow library 🖥️🖱️

No description, website, or topics provided.

Emoji-Log — An Emoji Git commit log messages spec standard. [ 📦👌🐛📖🚀🤖 ‼️]

Build powerful pipelines in any programming language.

BWK awk modified for biological data

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A dashboard for Tekton!

🔍 A smart launcher. Powered by JavaScript.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

go版本极简工作流引擎

Experimental visual Go environment