1292 Open source projects that are alternatives of or similar to Scipipe

Experimental visual Go environment

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

GitHub Action that adds compressed size changes to your PRs.

基于Pipeline实现的JT1078Gateway支持TCP/UDP,目前只支持http-flv、ws-flv、hls三种拉流方式

Free Open Source Enterprise Grade RPA

Fast motif matching in R

Tools to process and analyze deep sequencing data.

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

Modular and universal bioinformatics

Collective Knowledge framework (CK) helps to organize black-box research software as a database of reusable components and micro-services with common APIs, automation actions and extensible meta descriptions. See real-world use cases from Arm, General Motors, ACM, Raspberry Pi foundation and others:

The uncompromising Snakemake code formatter

A curated list of awesome bioinformatics software.

A simple tool that automates generating and updating a changelog

A BPMN 2.0 workflow engine for PHP

A modern genome browser built with JavaScript and HTML5.

Sample search by metadata and features

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

MMseqs2: ultra fast and sensitive search and clustering suite

Python library for dataflow programming.

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Easy pipelines for pandas DataFrames.

Per-base per-nucleotide depth analysis

Cocoon – a flow-based workflow automation, data mining and visual analytics tool.

A D library for computational biology and bioinformatics

Jenkins X provides automated CI+CD for Kubernetes with Preview Environments on Pull Requests using Cloud Native pipelines from Tekton

Pipeline for training LSA models using Scikit-Learn.

An image build orchestrator for the modern web

Scalable genomic data analysis.

A computational library for learning and evaluating biological knowledge graph embeddings

Easy to use library to bring Tensorflow on Apache Spark

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

A tool for managing builds of monorepo frontend projects with eg. npm- or yarn workspaces, lerna or similar tools into a standalone application - no other tools needed.

An open-source tool for processing stream data using a spreadsheet-like interface.

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

A proposal for adding a useful pipe operator to JavaScript.

Provide R access to the NCI Genomic Data Commons portal.

Accurate sample inference from amplicon data with single nucleotide resolution

Useful bioinformatic scripts

Godot Engine Automation Pipeline Android – iOS – Linux – MacOS – Windows – HTML5 – Itch.io.

M-Lab ingestion pipeline

Kubernetes custom controller and CRDs to managing Airflow

a realtime plotting utility for terminal/console with data input from stdin

Production Data Science: a workflow for collaborative data science aimed at production

WebLogo 3: Sequence Logos redrawn

An action that allows you to check whether your npm package version has been updated

A tiny debugging library for Ruby

Rapid determination of appropriate reference genomes.

The open and extensible integrated development environment (IDE) for computer vision with built-in modules for model building, automated labeling, data processing, model training, hyperparameter tuning and workflow orchestration.

An open-access bioinformatics text

Structural variant and indel caller for mapped sequencing data

Unsupervised domain adaptation method for relation extraction

Fiercely quick front-end boilerplate and workflows, HTML5, Gulp, Sass

Kubernetes workflow controller

Open-source code analysis platform for C/C++/Java based on code property graphs

Basin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

⛏️ ‎ A front-end design toolkit for developing web apps.

A library adding some anti-Pythonic syntatic sugar to Python

Python and C++ code for reading and writing genomics data.

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