1292 Open source projects that are alternatives of or similar to Scipipe

Data intensive science for everyone.

A DSL for data-driven computational pipelines

An open source platform for managing and analyzing biomedical big data

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Robust and efficient workflows using a simple language agnostic approach

UGENE is free open-source cross-platform bioinformatics software

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

DEPRECIATED! Please use nf-core/tools instead

Cuneiform distributed programming language

A library to build and execute typed scientific workflows

A repository for setting up a RNAseq workflow

Machine is a workflow/pipeline library for processing data

Reusable workflow library for Django

Kogito Runtimes - Kogito is a cloud-native business automation technology for building cloud-ready business applications.

a workflow engine

a web system to allow users to automatically record history and manage complicated scientific workflows in web browsers involving the online spatial data facilities, high-performance computation platforms, and open-source libraries.

Simple and reliable workflow engine, written in Ruby

pipen - A pipeline framework for python

基于C#语言研发的Smartflow-Sharp工作流组件，该工作流组件的特点是简单易用、方便扩展、支持多种数据库访问、高度可定制化，支持用户按需求做功能的定制开发，节省用户的使用成本

A curated list of resources for machine learning for small-molecule drug discovery

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

The easiest way to automate your data

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

Lightweight workflow engine microservice implement BPMN 2.0

Titanoboa makes complex workflows easy. It is a low-code workflow orchestration platform for JVM - distributed, highly scalable and fault tolerant.

Workflows and interfaces for neuroimaging packages

Function Composition for OpenFaaS

[Deprecated, use flor_core instead] A Rails engine which providing essential infrastructure of workflow. It's based on Workflow Nets.

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Django workflow library that supports on the fly changes ⛵

The official repository for the AiiDA code

A lightweight, distributed workflow system

数据可视化, 数据挖掘, 数据处理 ETL

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

💎 Ruby gem to run and orchestrate background jobs with Zenaton Workflow Engine

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

workflow engine activity activiti

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Distributed workflow server

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Reusable workflow library for Django

A simplified pipeline for ctDNA sequencing data analysis

Tukio is an event based workflow generator library

A set of libraries for rapidly developing Pipeline driven micro/macroservices.

Lightweight workflow engine for .NET Standard

A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Check Wiki for details

CMMN engine implementation in dotnet core

The Chemistry Development Kit

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Function-oriented Make-like declarative workflows for R

Build workflows, activities, BPMN like processes, or state machines with PVM.

Parallel programming with Python

piper - a distributed workflow engine

A cross-platform command-line tool for executing jobs in parallel

Open source remote collaboration platform used for configuring and deploying enterprise Workflow solutions.

µTask is an automation engine that models and executes business processes declared in yaml. ✏️📋