381 Open source projects that are alternatives of or similar to SHARP

<<------ Use SnapATAC!!

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Single cell type annotation guided by cell atlases, with freedom to be queer

BEER: Batch EffEct Remover for single-cell data

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

A comprehensive dimensional reduction framework to recover the latent topology from high-dimensional data.

SyncFlux is an Open Source InfluxDB Data synchronization and replication tool for migration purposes or HA clusters

Comparison of dimensionality reduction methods

Heart Disease prediction using 5 algorithms

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

자연어 처리와 텍스트 분석을 위한 오픈소스 파이썬 라이브러리 입니다.

COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools

The PyTorch official implementation of the CVPR2021 Poster Paper NNM: Nearest Neighbor Matching for Deep Clustering.

R package to visualize gene expression data based on weighted kernel density estimation

https://dodiku.github.io/audio_noise_clustering/results/ ==> An experiment with a variety of clustering (and clustering-like) techniques to reduce noise on an audio speech recording.

Implementation of a Quantum inspired genetic algorithm proposed by A quantum-inspired genetic algorithm for k-means clustering paper.

ST-DBSCAN: Simple and effective tool for spatial-temporal clustering

C4E, a JVM friendly library written in Scala for both local and distributed (Spark) Clustering.

Demultiplexing pooled scRNA-seq data with or without genotype reference

Revisiting Contrastive Methods for Unsupervised Learning of Visual Representations. [NeurIPS 2021]

A collection of 50+ trajectory inference methods within a common interface 📥📤

A high-level Docker Services management tool built on top of Swarm

Spatial alignment of single cell transcriptomic data.

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

Implementation of SOM and GSOM

Efficient and precise single-cell reference atlas mapping with Symphony

A Python implementation of divisive and hierarchical clustering algorithms. The algorithms were tested on the Human Gene DNA Sequence dataset and dendrograms were plotted.

文本聚类（Kmeans、DBSCAN、LDA、Single-pass）

Mathematical & Statistical topics to perform statistical analysis and tests; Linear Regression, Probability Theory, Monte Carlo Simulation, Statistical Sampling, Bootstrapping, Dimensionality reduction techniques (PCA, FA, CCA), Imputation techniques, Statistical Tests (Kolmogorov Smirnov), Robust Estimators (FastMCD) and more in Python and R.

This repository is a recommended track, designed to get started with Machine Learning.

Cluster management for Discord bots using the Eris library.

A python-based time series aggregation module (tsam) which can be used to reduce the number of time steps using typical periods or by decreasing the temporal resolution

Different clustering approaches applied on different problemsets

A repository of resources for understanding the concepts of machine learning/deep learning.

Parallel & lightning fast implementation of available classic and contemporary variants of the KMeans clustering algorithm

A simple C# class using Watson TCP to enable a one-to-one high availability cluster.

Flexible, extensible fuzzy c-means clustering in python.

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

Golang Utilities for Data Analysis

Visual exploration of clustered data.

Fuzzy c-means Clustering

ssdeep cluster analysis for malware files

An implementation of "Community Preserving Network Embedding" (AAAI 2017)

Dirichlet Process K-means

Ansible role to install Consul (cluster of) server/agent

Topic clustering library built on Transformer embeddings and cosine similarity metrics.Compatible with all BERT base transformers from huggingface.

A NetworkX implementation of "Ego-splitting Framework: from Non-Overlapping to Overlapping Clusters" (KDD 2017).

Hazelcast .NET Client

This repository contains the code of Vert.x examples contained in my articles published on platforms such as kodcu.com, medium, dzone. How to run each example is described in its readme file.

A NetworkX implementation of Label Propagation from a "Near Linear Time Algorithm to Detect Community Structures in Large-Scale Networks" (Physical Review E 2008).

Modeling molecular ensembles with scalable data structures and parallel computing

A tool for fast and accurate summarizing of variant calling format (VCF) files

Simulating single-cell data using gene regulatory networks 📠

c++ implementation of clustering by DBSCAN

Create and manage clusters for large amounts of markers

Misc Statistics and Machine Learning codes in R

This project is ABANDONWARE. Use https://www.rabbitmq.com/cluster-formation.html instead.

R interface for Fixed Effect Models

k-means clustering in Ruby

Analysis kit for large-scale structure datasets, the massively parallel way