273 Open source projects that are alternatives of or similar to Sixess

Predict plasmids from uncorrected long read data

A curated list of awesome bioinformatics software.

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

BACNET is a Java based platform to develop website for multi-omics analysis

Feature Annotation Location Description Ontology

Efficient pythonic random access to fasta subsequences

Find causal cell-types underlying complex trait genetics

Python library to handle Gene Ontology (GO) terms

Assembling the cause of phenotypes and genotypes from NGS data

Fast genome-wide functional annotation through orthology assignment

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Ultra-fast and memory-efficient (meta-)genome assembler

A fast 23andMe genome text file parser, now superseded by arv

Tools to process and analyze deep sequencing data.

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

An open source platform for managing and analyzing biomedical big data

An ontology of cell types

tools for working with genome variation graphs

Fast alignment and preprocessing of chromatin profiles

annotate a VCF with other VCFs/BEDs/tabixed files

An open-access bioinformatics text

The next version of bwa-mem

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Example client programs for Saphetor's VarSome annotation API

De novo genome assembly and multisample variant calling

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A fast and sensitive gapped read aligner

De novo assembly based variant calling pipeline for Illumina short reads

Scripts to download genomes from the NCBI FTP servers

Earl Grey: A fully automated TE curation and annotation pipeline

Java utilities for Bioinformatics

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Data intensive science for everyone.

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

A comprehensive tutorial about GWAS and PRS

Inference of switch-like differential expression along single-cell trajectories

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Home of the Genomic Feature and Variation Ontology (GFVO)

A high-performance, Pythonic language for bioinformatics

Introduction to Cloud Computing for Genomics

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

A React web application to query and share any PostgreSQL database.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

C++ library and cmdline tools for parsing and manipulating VCF files

Provide R access to the NCI Genomic Data Commons portal.

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Genetic Map Comparison

Scalable genomic data analysis.

Bystro genetic analysis (annotation, filtering, statistics)

PHANOTATE: a tool to annotate phage genomes.

Version 2.1.0 released

Python library to facilitate genome assembly, annotation, and comparative genomics

Detection of NCLDV signatures in 'omic data

Efficient variant-call data storage and retrieval library using the TileDB storage library.

A Suite of Packages for Analysis of Big Genomic Data

Python and C++ code for reading and writing genomics data.

A modern genome browser built with JavaScript and HTML5.

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI