63 Open source projects that are alternatives of or similar to SlicerRadiomics

The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

Backend Server for CIViC Project

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Automated 3D cell detection and registration of whole-brain images

A good foundation for your next frontend project.

An interactive web portal for exploring immuno-oncology data

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Tools and libraries that deal with the creation and processing of images.

Cancer-dedicated gene set interpretation

Some GIMP scripts

A python package for Abel and inverse Abel transforms

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

Provide R access to the NCI Genomic Data Commons portal.

Qt capture software for astronomy, mainly planetary shooting

Discover, install, and share napari plugins

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

Text mining cancer biomarkers for the CIVIC database

Convolutional AutoEncoder application on MRI images

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

A basic framework for pulmonary nodule detection and characterization in CT

Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/

An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical …

Gene fusion detection and visualization

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

No description or website provided.

CNN histopathologic tumor identifier.

Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.

Multi-task deep learning framework for multi-omics data analysis

Converts raw image (img) files into full flash update (FFU) files

Aplicativo para o projeto "Anjos do SuperAção"

Windows Sample in C#, C++, Python, LabVIEW and Java

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Easy to use DICOMWEB enabled PACS with DIMSE services based on sqlite database

(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018

BIDScoin converts your source-level neuroimaging data to BIDS

3D hotspot mutation proximity analysis tool

All things Miniscope v4

Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.

Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files

A Python-Tensorflow neural network for classifying cancer data

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

Super-Resolution imaging with Convolutional Neural Network library for G++, Non-OpenCV model.

List of IARC bioinformatics nextflow pipelines

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

A Julia project demonstrating the fast f-k migration algorithm.

Cancer Predisposition Sequencing Reporter (CPSR)

3D Slicer extension containing tools for importing DICOM PET series

OpenGnsys (pronounced Open Genesis) is a free and open source project that provides tools for managing and deploying different operating systems.

A Slicer extension that enables user to interact with a Slicer scene using virtual reality.

TCGA data acquisition and processing for Project Cognoma

Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other…

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

3D Slicer Module for connecting to model repository and use models for image analysis.

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

JavaScript library to display interactive medical images including but not limited to DICOM

Fast and accurate gene fusion detection from RNA-Seq data