794 Open source projects that are alternatives of or similar to Splatter

Data and analysis for the Splatter paper

An efficient FASTQ manipulation suite

A particle simulation engine based on a port of d3-force

🌇 A simulation of a city using isometric tiles

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

A framework for analysing financial products in personalized contexts

Arduino (8-bit AVR) simulator, written in JavaScript and runs in the browser / Node.js

A scientific software for the numerical simulation of seismic wave phenomena and earthquake dynamics

Benchmarking programming languages/implementations for common tasks in Bioinformatics

Models of COVID-19 outbreak trajectories and hospital demand

This project has moved to https://git.dynare.org/Dynare/dynare

SortMeRNA: next-generation sequence filtering and alignment tool

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Use AWS RoboMaker and demonstrate running a simulation which trains a reinforcement learning (RL) model to drive a car around a track

An implementation of Andy Lomas' Cellular Forms.

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

APBS - software for biomolecular electrostatics and solvation

A 3D physics engine

Schematics for DLS - The Digital Logic Simulator game http://makingartstudios.itch.io/dls

An open source re-implementation of RollerCoaster Tycoon 2 🎢

UGENE is free open-source cross-platform bioinformatics software

Demonstrating best practices for bioinformatics command line tools

Single cell perturbation prediction

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

✏️ A versatile DNA sequence optimizer

GCP Essentials for Bioinformatics Researchers

Live Hardware Development (LiveHD), a productive infrastructure for Synthesis and Simulation

Application for making ENCODE Blacklists

Working through Structure and Interpretation of Classical Mechanics.

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

批量生成应用平台 http://t.cn/RazBbL0

dna2vec: Consistent vector representations of variable-length k-mers

Implementation of the Barnes Hut Algorithm in rust with visualization and web-deployment using WASM

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315

Simulate genealogical trees and genomic sequence data using population genetic models

NGLess: NGS with less work

Fast creation and configuration of topologies, traffic matrices and event schedules for network experiments

Code examples of fast and simple k-mer counters for tutorial purposes

A collection of scripts and notes related to genomics and bioinformatics

A cool place to store your Hi-C

pymzML - an interface between Python and mzML Mass spectrometry Files

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Collective variables module for molecular simulation and analysis programs

Bio4j abstract model and general entry point to the project

Framework for developing OpenAI Gym robotics environments simulated with Ignition Gazebo

Notebook-integrated tools for molecular simulation and visualization

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

A 𝒔𝒕𝒆𝒍𝒍𝒂𝒓 simulated 8-bit computer architecture

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Antimicrobial Resistance Identification By Assembly

Python module for average nucleotide identity analyses

A DSL for data-driven computational pipelines

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

A curated list of software emulators and simulators of PCs, home computers, mainframes, consoles, robots and much more...

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

Ethereum end-to-end test harness

ECG classification programs based on ML/DL methods

A tool to circularize genome assemblies