All Projects → stochpy → Similar Projects or Alternatives

86 Open source projects that are alternatives of or similar to stochpy

pysces
The official PySCeS project source code repository.
Stars: ✭ 25 (-30.56%)
simon-frontend
💹 SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform 💻
Stars: ✭ 114 (+216.67%)
Mutual labels:  systems-biology
Nano Win
GNU nano text editor for Windows [WARNING: The master branch is constantly rebased and force-pushed so don't expect it to be steady!! -end WARNING]
Stars: ✭ 123 (+241.67%)
Mutual labels:  console-application
Libcon.ahk
LibCon - AutoHotkey Library For Console Support
Stars: ✭ 50 (+38.89%)
Mutual labels:  console-application
Hexed
Windows console-based hex editor
Stars: ✭ 145 (+302.78%)
Mutual labels:  console-application
ecell4 base
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Stars: ✭ 61 (+69.44%)
Mutual labels:  systems-biology
Zui
⬢ Zsh User Interface library – CGI+DHTML-like rapid application development with Zsh
Stars: ✭ 95 (+163.89%)
Mutual labels:  console-application
biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Stars: ✭ 96 (+166.67%)
Mutual labels:  systems-biology
Moe
A command line based editor inspired by vi/vim. Written in Nim.
Stars: ✭ 252 (+600%)
Mutual labels:  console-application
Mtm
Perhaps the smallest useful terminal multiplexer in the world.
Stars: ✭ 677 (+1780.56%)
Mutual labels:  console-application
Mapscii
🗺 MapSCII is a Braille & ASCII world map renderer for your console - enter => telnet mapscii.me <= on Mac (brew install telnet) and Linux, connect with PuTTY on Windows
Stars: ✭ 5,886 (+16250%)
Mutual labels:  console-application
Mocp
Music On Console Player
Stars: ✭ 171 (+375%)
Mutual labels:  console-application
newt
A web application to visualize and edit pathway models
Stars: ✭ 46 (+27.78%)
Mutual labels:  systems-biology
Hledger
A reliable, user-friendly Plain Text Accounting tool with command line, terminal and web interfaces.
Stars: ✭ 1,887 (+5141.67%)
Mutual labels:  console-application
shiny-iatlas
An interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (+19.44%)
Mutual labels:  systems-biology
Vifm
Vifm is a file manager with curses interface, which provides Vim-like environment for managing objects within file systems, extended with some useful ideas from mutt.
Stars: ✭ 1,822 (+4961.11%)
Mutual labels:  console-application
chise.js
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Stars: ✭ 15 (-58.33%)
Mutual labels:  systems-biology
Mazu Editor
a minimalist text editor with syntax highlight, copy/paste, and search
Stars: ✭ 88 (+144.44%)
Mutual labels:  console-application
sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
Stars: ✭ 21 (-41.67%)
Mutual labels:  systems-biology
Kakoune
mawww's experiment for a better code editor
Stars: ✭ 7,593 (+20991.67%)
Mutual labels:  console-application
CellMLToolkit.jl
CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
Stars: ✭ 50 (+38.89%)
Mutual labels:  systems-biology
Htop
htop is an interactive text-mode process viewer for Unix systems. It aims to be a better 'top'.
Stars: ✭ 5,626 (+15527.78%)
Mutual labels:  console-application
pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Stars: ✭ 99 (+175%)
Mutual labels:  systems-biology
Sc Im
sc-im - Spreadsheet Calculator Improvised -- An ncurses spreadsheet program for terminal
Stars: ✭ 3,081 (+8458.33%)
Mutual labels:  console-application
Vis
A vi-like editor based on Plan 9's structural regular expressions
Stars: ✭ 3,709 (+10202.78%)
Mutual labels:  console-application
Tty Markdown
Convert a markdown document or text into a terminal friendly output.
Stars: ✭ 275 (+663.89%)
Mutual labels:  console-application
Pms
Practical Music Search is an interactive Vim-like console client for the Music Player Daemon.
Stars: ✭ 182 (+405.56%)
Mutual labels:  console-application
workshop omics integration
Workshop in omics integration and systems biology
Stars: ✭ 32 (-11.11%)
Mutual labels:  systems-biology
Kilua
A minimal text-editor with lua scripting.
Stars: ✭ 158 (+338.89%)
Mutual labels:  console-application
pyPESTO
python Parameter EStimation TOolbox
Stars: ✭ 93 (+158.33%)
Mutual labels:  systems-biology
Criterion
Microbenchmarking for Modern C++
Stars: ✭ 140 (+288.89%)
Mutual labels:  console-application
EscherConverter
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
Stars: ✭ 14 (-61.11%)
Mutual labels:  systems-biology
Pong Command
pong is not ping. pong is CLI game.
Stars: ✭ 121 (+236.11%)
Mutual labels:  console-application
smfsb
Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
Stars: ✭ 27 (-25%)
Mutual labels:  systems-biology
Nload
Real-time network traffic monitor
Stars: ✭ 121 (+236.11%)
Mutual labels:  console-application
cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Stars: ✭ 30 (-16.67%)
Mutual labels:  systems-biology
Linkcrawler
Find broken links in webpage
Stars: ✭ 102 (+183.33%)
Mutual labels:  console-application
MomentClosure.jl
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
Stars: ✭ 34 (-5.56%)
Mutual labels:  systems-biology
Frosting
A stand-alone .NET runner and host for Cake.
Stars: ✭ 88 (+144.44%)
Mutual labels:  console-application
doctoral-thesis
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
Stars: ✭ 26 (-27.78%)
Mutual labels:  systems-biology
Pric
Simple zero-config tool to create Private Certificate Authority & issue locally-trusted development server certificates with any domain names you'd like. SSL certificates for development purposes.
Stars: ✭ 87 (+141.67%)
Mutual labels:  console-application
CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Stars: ✭ 27 (-25%)
Mutual labels:  systems-biology
Mattext
Simple matrix-style pager
Stars: ✭ 34 (-5.56%)
Mutual labels:  console-application
parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Stars: ✭ 16 (-55.56%)
Mutual labels:  systems-biology
Supreme
A command line visual file manager for linux
Stars: ✭ 22 (-38.89%)
Mutual labels:  console-application
DEcode
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
Stars: ✭ 16 (-55.56%)
Mutual labels:  systems-biology
Pboy
a small .pdf management tool with a command-line UI
Stars: ✭ 662 (+1738.89%)
Mutual labels:  console-application
dingo
A python library for metabolic networks sampling and analysis
Stars: ✭ 29 (-19.44%)
Mutual labels:  systems-biology
Box
📦🚀 Fast, zero config application bundler with PHARs.
Stars: ✭ 574 (+1494.44%)
Mutual labels:  console-application
pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Stars: ✭ 47 (+30.56%)
Mutual labels:  systems-biology
Ntop
💻 htop-like system-monitor for Windows with Vi-keybindings.
Stars: ✭ 434 (+1105.56%)
Mutual labels:  console-application
Commanddotnet
A modern framework for building modern CLI apps
Stars: ✭ 251 (+597.22%)
Mutual labels:  console-application
Php Console
🖥 PHP CLI application library, provide console argument parse, console controller/command run, color style, user interactive, format information show and more. 功能全面的PHP命令行应用库。提供控制台参数解析, 命令运行,颜色风格输出, 用户信息交互, 特殊格式信息显示
Stars: ✭ 310 (+761.11%)
Mutual labels:  console-application
SBMLToolkit.jl
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Stars: ✭ 25 (-30.56%)
Mutual labels:  systems-biology
conso
💢 PHP console applications for cool kids 💢
Stars: ✭ 40 (+11.11%)
Mutual labels:  console-application
Laravel Zero
A PHP framework for console artisans
Stars: ✭ 2,821 (+7736.11%)
Mutual labels:  console-application
xamarin-forms-gui.cs
Xamarin.Forms gui.cs Backend
Stars: ✭ 74 (+105.56%)
Mutual labels:  console-application
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
Stars: ✭ 72 (+100%)
Mutual labels:  systems-biology
findr
Fast Inference of Networks from Directed Regulations
Stars: ✭ 19 (-47.22%)
Mutual labels:  systems-biology
colomoto-docker
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Stars: ✭ 15 (-58.33%)
Mutual labels:  systems-biology
1-60 of 86 similar projects