metacherchantNo description or website provided.
Stars: ✭ 19 (-17.39%)
MetaCoAGBinning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Stars: ✭ 29 (+26.09%)
charcoalRemove contaminated contigs from genomes using k-mers and taxonomies.
Stars: ✭ 32 (+39.13%)
bonsaiBonsai: Fast, flexible taxonomic analysis and classification
Stars: ✭ 66 (+186.96%)
DRAMDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 159 (+591.3%)
JovianMetagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Stars: ✭ 14 (-39.13%)
traitarFrom genomes to phenotypes: Traitar, the microbial trait analyzer
Stars: ✭ 41 (+78.26%)
ORNAFast in-silico normalization algorithm for NGS data
Stars: ✭ 21 (-8.7%)
recentrifugeRecentrifuge: robust comparative analysis and contamination removal for metagenomics
Stars: ✭ 79 (+243.48%)
Maaslin2MaAsLin2: Microbiome Multivariate Association with Linear Models
Stars: ✭ 76 (+230.43%)
functree-ngAn interactive radial tree for functional hierarchies and omics data visualization
Stars: ✭ 18 (-21.74%)
metacalMetagenomics calibration R package
Stars: ✭ 16 (-30.43%)
miccamicca - MICrobial Community Analysis
Stars: ✭ 19 (-17.39%)
SemiBinNo description or website provided.
Stars: ✭ 25 (+8.7%)
virnetVirNet: A deep attention model for viral reads identification
Stars: ✭ 26 (+13.04%)
microbiomeMarkerR package for microbiome biomarker discovery
Stars: ✭ 89 (+286.96%)
GraphBinGraphBin: Refined binning of metagenomic contigs using assembly graphs
Stars: ✭ 35 (+52.17%)
matamMapping-Assisted Targeted-Assembly for Metagenomics
Stars: ✭ 18 (-21.74%)
DAtestCompare different differential abundance and expression methods
Stars: ✭ 34 (+47.83%)
catchA package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (+139.13%)
Binning refinerImproving genome bins through the combination of different binning programs
Stars: ✭ 26 (+13.04%)
melonnpanModel-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Stars: ✭ 20 (-13.04%)
InSilicoSeq🚀 A sequencing simulator
Stars: ✭ 116 (+404.35%)
AMBERAMBER: Assessment of Metagenome BinnERs
Stars: ✭ 18 (-21.74%)
MG-RASTThe MG-RAST Backend -- the API server
Stars: ✭ 39 (+69.57%)
macrelPredict AMPs in (meta)genomes and peptides
Stars: ✭ 34 (+47.83%)
covid-19-signalFiles and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Stars: ✭ 31 (+34.78%)
DeepMAsEDDeep learning for Metagenome Assembly Error Detection
Stars: ✭ 24 (+4.35%)
sunbeamA robust, extensible metagenomics pipeline
Stars: ✭ 143 (+521.74%)
ganonganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more
Stars: ✭ 57 (+147.83%)
kraken-biomCreate BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
Stars: ✭ 35 (+52.17%)
MOSCAMeta-Omics Software for Community Analysis
Stars: ✭ 26 (+13.04%)
gargammelgargammel is an ancient DNA simulator
Stars: ✭ 17 (-26.09%)
panacheNo description or website provided.
Stars: ✭ 24 (+4.35%)