25 Open source projects that are alternatives of or similar to treebest

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

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MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

3D hotspot mutation proximity analysis tool

The Ensembl Compara Perl API and SQL schema

Ancestor character reconstruction and visualisation for rooted phylogenetic trees

Functions for phylogenetic analyses

R package that provides estimation methods for Gravity Models

Interactive assembly and analysis of RAD-seq data sets

Specifications of the reconciliation API

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Detection of evolutionary shifts in Ornstein-Uhlenbeck models

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A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

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Matlab package for learning to specify, compute, and estimate dynamic discrete choice models

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A fast and scalable phylogenetic tree viewer for microbiome data analysis

UIKit a-là SwiftUI.framework [min deployment target iOS10]

OpenRefine is a free, open source power tool for working with messy data and improving it

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