60 Open source projects that are alternatives of or similar to usher

Coronavirus time series aligned by number of cases, not date.

Collection of links and information about COVID-19

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermittel…

Version 5 of the CAFE phylogenetics software

Detects anomalous resting heart rate from smartwatch data.

A simple, decentralized. privacy-reserving contact tracing system

Sequence lineage information extracted from RKI sequence data repo

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Collects official SARS-CoV-2 infection statistics published by the city of Dresden.

Phylogenetic trees in Julia

covid-19 data in J

R package to obtain and analyze live data from the nCOVID19 coronavirus

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

Python version of PHLAWD

Mobile application of Covid19 Cuba Data project implemented with Flutter

Sequential Tree Sampler for online phylogenetics

MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store

Ancestor character reconstruction and visualisation for rooted phylogenetic trees

중국 우한 바이러스 한국 확진자 통계

Das Nowcasting erstellt eine Schätzung des Verlaufs der Anzahl von bereits erfolgten SARS-CoV-2-Erkrankungsfällen in Deutschland unter Berücksichtigung des Diagnose-, Melde- und Übermittlungsverzugs.

A HTML/JavaScript simulator for an epidemc on a population

Implementing semantically rich NeXML I/O in R

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

Modular Multi-scale Integrated Genome Graph Browser

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Collection of AI resources to fight against Coronavirus (COVID-19)

Covid-19_Ampel | Zeigt neben der 7-Tage-Inzidenz weitere Infos zu einer Region.

Metadata and code to support covid-19 wastewater surveillance and open science.

A library for working with phylogenetic and population genetic data.

COVID-19 infectious forecasting using SEIR model and R0 estimation

A tool for exploring very large trees in the browser

Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

A course in the theory and practice of phylogenetic inference from DNA sequence data

Pyro models of SARS-CoV-2 variants

Release COVID-19 (SARS-CoV-2) FDA / NHI drugs screening results.

📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.

Alignment editor for Mac OS X

Ultra-deep search for novel viruses

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

[IoT'20] Predicting the Growth and Trend of COVID-19 Pandemic using Machine Learning and Cloud Computing

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

Java API Wrapper for tracking coronavirus (COVID-19, SARS-CoV-2) via https://git.io/Jvoep

♥ Fast and Accurate Estimation of Evolutionary Distances

Collection template and associated materials for SARS-CoV-2 metadata

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

SARS-CoV-2 workflow for nanopore sequence data

Official git repository for Biopython (originally converted from CVS)

Biological Sequence Substitution Models for Julia

COVID-19 tracking app - submission for https://wirvsvirushackathon.org/

Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

Phylogenetic Likelihood Library

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