705 Open source projects that are alternatives of or similar to Vg

Analysis pipelines for sequencing data

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Ultrafast sequence typing and gene detection from NGS raw reads

Official code repository for GATK versions 4 and up

A Java API for high-throughput sequencing data (HTS) formats.

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Efficient pythonic random access to fasta subsequences

A package for designing compact and comprehensive capture probe sets.

A curated list of awesome bioinformatics software.

A collection of scripts and notes related to genomics and bioinformatics

Data intensive science for everyone.

A fast 23andMe genome text file parser, now superseded by arv

A package for designing activity-informed nucleic acid diagnostics for viruses.

Numerical Encoding for Human Genetic Variants

Official git repository for Biopython (originally converted from CVS)

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Python and C++ code for reading and writing genomics data.

Visualize your aws security groups.

Statistical Machine Intelligence & Learning Engine

3D graph visualization with WebGL / Three.js

Little Ball of Fur - A graph sampling extension library for NetworKit and NetworkX (CIKM 2020)

Package goraph implements graph data structure and algorithms.

JavaScript diagramming library for interactive flowcharts, org charts, design tools, planning tools, visual languages.

Scripts to download genomes from the NCBI FTP servers

3d engine implementation in DNA code!

Ninety-Nine Problems in Kotlin

CLRS study. Codes are written with golang.

Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more

EliasDB a graph-based database.

☊ Tool for making node graphs. Inspired by dependency graph. Used mainly for automation services 📈

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

A Portable Graphic Format for TeX

A Graph Data Structure in Pure Swift

📊 Re-usable, easy interface JavaScript chart library based on D3.js

Runs your tasks at maximum concurrency

Simple read-only comand-line interface to your Things 3 database

View the dependencies tree of you Angular application

SeeGit - The Git Repository Visualizer

A react component to render nice graphs using vis.js

Easy to use and highly customizable pie charts library for iOS

official implementation for the paper "Simplifying Graph Convolutional Networks"

Scala wrapper for Apache TinkerPop 3 Graph DSL

Gephi - The Open Graph Viz Platform

An introduction to network analysis and applied graph theory using Python and NetworkX

🥞Data Structures and Algorithms explained and implemented in JavaScript + eBook

A 2d function plotter powered by d3 and interval arithmetic

A blazing fast library to create a functional dashboard for ESP8266 and ESP32

leetcode.com , algoexpert.io solutions in python and swift

A system for making generative systems

🌳 React component to create interactive D3 tree graphs

Experimental visual Go environment

📚 📈 Plug-and-play class-library project of standard Data Structures and Algorithms in C#

Algebraic graphs

Content-addressed, authenticated, immutable data structures

Tools to process and analyze deep sequencing data.

Package for causal inference in graphs and in the pairwise settings. Tools for graph structure recovery and dependencies are included.

Specification of the Cypher property graph query language

Spatio-temporal modeling 论文列表（主要是graph convolution相关)

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Node graph editor framework focused on data processing using Unity UIElements and C# 4.6