48 Open source projects that are alternatives of or similar to Vimpdb

Remote vanilla PDB (over TCP sockets).

Tool for PDB generation from IDA Pro database

PDBRipper is a utility for extract an information from PDB-files.

A cheatsheet for the Python Debugger (pdb)

.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!

Full-screen console debugger for Python

Syntax highlighting for computational biology

A parser for Microsoft PDB (Program Database) debugging information

A Python API for the RCSB Protein Data Bank (PDB)

pdb + Rich library

Monte Carlo and Molecular Dynamics Simulation Package

Pytest PuDB debugger integration

Some useful Tips and Tricks to speed up the data analysis process in Python.

📖 mmCIF support for hybrid/integrative models

gevent tools

A tool which allows you to edit source code of any MSVC C++ project live at runtime

A simple tutorial about effectively using pdb

pdb++, a drop-in replacement for pdb (the Python debugger)

ReClassEx

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB

Working with molecular structures in pandas DataFrames

An open library for the analysis of molecular dynamics trajectories

Protein cavity identification and automatic subpocket decomposition

A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

VSCode Extension for interactively visualising protein structure data in the editor

PDB parser in Haskell

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

RosettaDesign using PyRosetta

TeamCity Symbol Server plugin

Debug Python code within a Docker container remotely from your terminal using pudb

Remotely and collaboratively debug your Python application via an IRC channel.

Protein structure comparison tools such as SSAP and SNAP

Benchmarking common tasks on proteins in various languages and packages

Protein Secondary Structure predictor using Convolutional Neural Networks

Application to assign secondary structure to proteins

Just another tool to download specify Symbol (.pdb) files

Fetch PDB symbols directly from Microsoft's symbol servers

Converts between Windows PDB and Portable PDB formats.

NoPdb: Non-interactive Python Debugger

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

A dependency-free cross-platform swiss army knife for PDB files.

MOLeculAR structure annoTator

Single Page Web Application for displaying and studying molecular models

Utility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file

Syntax highlighting for computational biology

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

A tool to make Windows builds reproducible.