971 Open source projects that are alternatives of or similar to Vistrails

Function-oriented Make-like declarative workflows for R

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

An R-focused pipeline toolkit for reproducibility and high-performance computing

Workflow Description Language - Specification and Implementations

Example workflows for the drake R package

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

UGENE is free open-source cross-platform bioinformatics software

Machine is a workflow/pipeline library for processing data

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Short course on reproducible science: what, why, how

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Data intensive science for everyone.

A DSL for data-driven computational pipelines

A curated list of reproducible research case studies, projects, tutorials, and media

Short course on the targets R package

Pythonic functions for creating and enhancing Hydra applications

Open solution to the Google AI Object Detection Challenge 🍁

Lightweight, Python library for fast and reproducible experimentation 🔬

Robust and efficient workflows using a simple language agnostic approach

Software Papers as Software Modules: Towards a Culture of Reusable Results

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

ATAC-seq peak-calling, QC and differential analysis pipeline

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Open solution to the Home Credit Default Risk challenge 🏡

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

A library to build and execute typed scientific workflows

🍴 Web applications made easy. Since 2011.

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

PLynx is a domain agnostic platform for managing reproducible experiments and data-oriented workflows.

DEPRECIATED! Please use nf-core/tools instead

Collective Knowledge framework (CK) helps to organize black-box research software as a database of reusable components and micro-services with common APIs, automation actions and extensible meta descriptions. See real-world use cases from Arm, General Motors, ACM, Raspberry Pi foundation and others:

A repository for setting up a RNAseq workflow

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Data Analysis Workflows & Reproducibility Learning Resources

Catalyst.Segmentation

Curated set of transformers that make your work with steppy faster and more effective 🔭

A minimal example data analysis project with the targets R package

Reproducible Science: what, why, how

Catalyst.Classification

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Examples and demos for ReproZip

Reproducible Data Science in Python (SciPy 2019 Tutorial)

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

rrtools: Tools for Writing Reproducible Research in R

NLP pipeline software using common workflow language

contains handy groovy workflow-libs scripts

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

The Prefect API and backend

a Business Process Management (BPM) Suite

An action which adds reviewers to the pull request when the pull request is opened.

Big Data Analytics Using Interactive Workflows

DSP pipeline

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

SSH workflow for Alfred for Mac with powerful hostname expansion/completion

Bump your git tag to the next version, easily. 👊

A simple Spark-powered ETL framework that just works 🍺

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).