8 open source projects by COMBINE-lab

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A bit-packed k-mer representation (and relevant utilities) for rust

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

💡 💾 💽 A simple, intuitive and Efficient single cell binary Data Storage format

An efficient index for the colored, compacted, de Bruijn graph

Useful tools for working with Salmon output

Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

Rapid sensitive and accurate read mapping via quasi-mapping